Peromyscus leucopus (white-footed mouse): 114697891
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Entry
114697891 CDS
T07241
Symbol
Atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04136
Autophagy - other
pleu04140
Autophagy - animal
pleu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
114697891 (Atg16l1)
04136 Autophagy - other
114697891 (Atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
114697891 (Atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pleu04131
]
114697891 (Atg16l1)
03029 Mitochondrial biogenesis [BR:
pleu03029
]
114697891 (Atg16l1)
Membrane trafficking [BR:
pleu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
114697891 (Atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
114697891 (Atg16l1)
Mitochondrial biogenesis [BR:
pleu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
114697891 (Atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_RFWD3
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_NWD2_C
KASH_CCD
Beta-prop_SPT8
ZapB
APEH_N
Fez1
Motif
Other DBs
NCBI-GeneID:
114697891
NCBI-ProteinID:
XP_028732109
LinkDB
All DBs
Position
13:4353373..4387894
Genome browser
AA seq
624 aa
AA seq
DB search
MSSGLRAAGFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLAQKLQAEK
HDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DREIQMNEAKIAECLQTISNLETECQDLRTKLQDLELANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDPTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSSDAA
RRRSVSSIPVPQDSVDTHPASGKDVRVPTTALYVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEAFGDKCEFKGSLTGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDSRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRSESVVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNTVK
QTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAV
AWAPSGLHVVSVDKGSKAVLWAQP
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctgcgcgccgcaggcttcccccgctggaagcgccacatcgcggaggag
ctgaggcgccgggaccggctgcagaggcaggcgttcgaagagatcatcctgcagtatacc
aagttgctggaaaagtcagatcttcattcagtattggcccagaaactgcaagctgaaaag
catgacataccaaataggcacgagataagtcctggacatgacggtgcgtggaatgatagt
cagctacaagaaatggcccagctgaggatcaaacaccaagaagagctgacggaattgcac
aagaaacgtggcgagttagctcagttggtgattgacctgaataaccaaatgcagcagaag
gaccgagagatacagatgaatgaagcaaaaattgcagagtgtttacagaccatctctaac
ctggagacagagtgccaggacctgcgaaccaaactgcaggacctggagctagccaaccag
accctgaaggatgagtatgatgccctgcagattacttttactgctctagaggagaaactg
aggaaaactactgaggagaaccaggagctggtcaccaggtggatggctgagaaggcccag
gaagccaatcgtctcaatgcagaaaacgagaaggactccaggagacgacaagcccggctg
cagaaggagcttgccgaggcagccaaggagcctctgcctgtggagcaggatgatgacatt
gaagtcattgtggacgagacctcagatcccactgaagagacctctcctgtgcgagctgtc
agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgaatctccccttttgggacatcattcttcttctgatgctgcc
aggagacgctctgtctcttccatcccagtccctcaggacagtgtggacactcatcctgct
tctggtaaagacgtgagagtcccaactactgccttgtatgtctttgatgcacatgatggg
gaagtcaatgcagtgcagttcagtccaggctcccggttactggccactggaggcatggac
cggagggttaaactgtgggaagcattcggagataaatgcgaattcaagggttccctgact
ggcagtaacgcaggaattacaagcattgaatttgatagtgctggagcttacctcttagca
gcttcaaatgattttgcaagccgaatctggactgtggatgattctcgattaaggcacaca
ctcacaggccacagtgggaaagtgctctctgccaagttcctgctggacaatgctcggata
gtctcaggaagtcacgaccggaccctcaaactctgggatctccgcagcaaagtctgcata
aagacagtatttgcaggttccagctgcaatgacattgtttgcactgagcaatgtgtaatg
agtggacattttgacaagaaaattcgtttctgggatataagatcagagagtgtggtccga
gagatggagctgttggggaagatcactgctctggacttaaacccggagagaactgagctc
ctgagctgctcccgtgatgacctgctgaaagtcattgacctccggacaaacactgtcaag
cagacgttcagtgctcctggcttcaaatgcggctctgactggacccgagttgttttcagc
cctgatggcagttatgtggcagcaggctcagccgagggttctctttatgtctggagtgtg
ctcacagggaaagtggagaaggttctttcaaaacagcacagctcctccataaatgcggtg
gcatgggccccctcgggcttgcatgttgtcagtgtggacaaaggaagcaaagctgtgttg
tgggcacaaccttga
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