Peromyscus leucopus (white-footed mouse): 114703011
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Entry
114703011 CDS
T07241
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pleu03016
]
114703011 (Rtcb)
Enzymes [BR:
pleu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114703011 (Rtcb)
Transfer RNA biogenesis [BR:
pleu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114703011 (Rtcb)
Prokaryotic type
tRNA splicing ligases
114703011 (Rtcb)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
114703011
NCBI-ProteinID:
XP_028739484
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All DBs
Position
18:complement(46938324..46961369)
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AA seq
571 aa
AA seq
DB search
MEDIITRGPRFAQRVLSLGACLPPSRGGAGRACALSPQRRLRGAGRQRGAFSFRAESRAA
AAFAATMSRNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNAC
RGGGVGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPG
GVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEM
GVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVV
DEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLA
CARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHN
IAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTG
TEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPES
YKNVTDVVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggaagacatcataacgagaggaccacgatttgcgcaacgagttttgagcctcggcgct
tgccttcctccctcccgcggcggagcgggacgcgcgtgcgccctgagtcctcagaggcgg
ctacgcggagccggtagacaacgcggcgccttctcgttccgagccgagtcgcgggctgcc
gccgccttcgccgccaccatgagtcgcaactacaacgatgagctgcagttcttggacaag
atcaataaaaactgctggaggatcaagaagggcttcgtgcccaacatgcaggttgaagga
gtattttatgtgaatgatgcgctggaaaaattgatgtttgaggaattaaggaatgcctgt
cgaggtggtggcgttggtggcttcctgccagccatgaagcagattggcaatgtggcagcc
ctgcccgggattgttcatcgctctattgggcttcctgatgtccactcaggctatgggttt
gccatagggaacatggctgcctttgatatgaatgaccccgaagcagtggtctccccaggt
ggtgtcggatttgacattaactgtggtgtccgcttgctaagaaccaatttagatgagagc
gatgtgcagcctgtgaaggaacaacttgcccaagctatgtttgaccacattcctgttggg
gtaggatcaaaaggtgtcatcccgatgaacgccaaagatttggaggaggctttggagatg
ggtgtggactggtctctgagagaaggctacgcctgggctgaagacaaggagcactgtgag
gagtatggaaggatgctgcaagctgaccccaataaggtctcacccagggcaaaaaaaaga
ggccttcctcagttggggaccctgggagcaggaaaccactatgcagaaatccaggttgta
gatgaaattttcaatgagtatgccgctaagaaaatgggcatcgaccataagggacaggtg
tgtgtgatgatccacagtggaagcagaggcttgggccaccaagtagccacagatgcactg
gtggctatggaaaaggccatgaagcgagacaagattatagtcaatgaccggcagttggct
tgtgctcgaattgcatccccagaggggcaagactatttaaagggaatggctgcagctgga
aactatgcctgggttaaccgttcttctatgaccttcttaacccgtcaggcttttgccaaa
gtcttcaacacaacccctgacgacctggacctgcatgtgatttatgatgtctctcacaat
atcgccaaagtggagcagcacgtggtagatgggaaggagcggacgctgttggtgcacagg
aaggggtccacccgcgctttcccgcctcaccacccactcatcgctgttgactaccagctc
actggacaaccagtgcttattggtggcaccatggggacatgtagttacgttctgactggc
actgaacaaggcatgactgagacctttggaacaacctgtcatggggcgggtcgtgcgttg
tcccgagcaaagtctcgccgtaatttagatttccaagatgtcttagacaaactggcagat
atgggaattgcaatccgtgttgcttcgcccaagctggttatggaagaggctccagagtcc
tataagaatgtgacagacgtcgtgaacacttgccatgatgctgggatcagcaagaaggcc
atcaaactgagaccaatcgctgtcattaaaggatag
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