Peromyscus leucopus (white-footed mouse): 114704847
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Entry
114704847 CDS
T07241
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114704847 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pleu03041
]
114704847 (Sf3b1)
03036 Chromosome and associated proteins [BR:
pleu03036
]
114704847 (Sf3b1)
Spliceosome [BR:
pleu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114704847 (Sf3b1)
Complex B
114704847 (Sf3b1)
Complex C
U2 SnRNP specific factors
114704847 (Sf3b1)
Chromosome and associated proteins [BR:
pleu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
114704847 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
114704847
NCBI-ProteinID:
XP_028742185
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Position
13:56902802..56950180
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaatccagggc
aagaaggcagctcttgatgaagcccaaggagtgggccttgattccacaggttattatgac
caagaaatttatggtggaagtgatagcagatttgctggatacgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgctgggtcagaag
aagcctggatatcatgcccctgtggctttgcttaatgatataccacagtcaacagaacag
tatgacccgtttgctgaacatcgtcctccaaagattgcagaccgggaagatgagtacaaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgaccctaaaatgaatgccagaacttacatggatgttatgcgggaacaacat
ctgactaaggaagagagagaaattaggcaacaactagccgaaaaagctaaagctggagaa
ctaaaagtcgtcaatggggcagcagcatcccagcctccctcaaaacgaaagcggcgctgg
gatcaaaccgctgaccagactcctggcgccactcccaaaaagctgtcaagttgggatcag
gcagagacccctgggcacaccccttctttaagatgggacgagacaccaggtcgtgcaaaa
ggaagtgaaacgcccggagcaaccccgggttcaaaaatatgggatcctacacctagtcat
acacctgcgggagccgctactcctggacgaggcgatacgccaggccatgcaaccccaggc
catggcggtgcaacttccagcgctcgtaaaaacagatgggacgagacccccaagacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gactctatcggggaaacaccaactcctggagcaagtaaaagaaagtctcgttgggatgaa
acaccggctagtcagatggggggaagcactcctgttctgactccaggaaaaacgccaatc
ggcacaccagccatgaacatggctacccccactccaggtcacataatgagcatgactcct
gaacagcttcaggcttggcgatgggagagagaaattgatgagcgaaaccgcccactttct
gatgaagaattagatgctatgttcccagaaggatataaggtccttcccccgccagctggt
tatgttcctattcgcactccagcccggaagctgacagcaacccccacacctttgggcggt
atgactggtttccacatgcagactgaagacaggacgatgaaaagtgtcaatgaccagccg
tctgggaacctgccgtttttgaagcctgatgacattcagtactttgataaactattggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaataatgaagttg
cttttaaaaattaagaatggtacacctccaatgagaaaggctgctttacgtcagattact
gataaagctcgagaatttggggctggacctttgtttaaccagattcttcctctgttgatg
tctcctacacttgaggatcaagagcgtcatttacttgtgaaagttattgataggatactg
tataaactggatgacttagtacggccatatgtgcacaagattcttgtggtcattgagccg
ctgctgattgatgaagattactatgccagagtggaaggccgagagattatttctaacttg
gcaaaggctgctggtctggctactatgatttctaccatgagacctgatatagataacatg
gatgagtatgtccgaaacacaacagctcgagcttttgccgttgtagcctctgccctgggc
attccttctctattgcccttcttaaaagctgtgtgcaaaagcaagaagtcttggcaagcc
aggcacactggtattaagattgtacaacagatagctattcttatgggctgtgctatcttg
ccacatctcagaagtttagttgaaatcattgaacacggtcttgtggatgaacagcagaaa
gttcggaccatcagtgctttggctattgctgctttggctgaagcagcgactccttacggt
atcgagtcgtttgactccgtgctcaagcctctatggaagggtatccgccagcacagagga
aagggtttggccgctttcttaaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactataccagagaagtgatgttaatccttattcgagaattccagtctcca
gatgaagaaatgaagaaaattgtattgaaggtggtgaaacagtgttgtggaacagatggt
gtagaagcaaactacattaaaacggaaattcttccacctttctttaaacacttctggcaa
cacagaatggctctggatagaagaaattaccgacagttagtcgacaccactgtggagctg
gcaaacaaagtaggagcagcagaaattatatctaggattgtggatgatctgaaagacgaa
gctgagcagtacaggaagatggtgatggagacaattgagaaaattatgggcaacctaggg
gcagcagatattgatcataaacttgaagaacaactgattgatggcattctttatgctttc
caagaacagactacagaggattcagtaatgttgaatggctttggcacagtagttaatgct
cttggcaaacgagtcaaaccgtacttgcctcagatctgcggtactgttttatggcgttta
aataacaaatcagcaaaagttaggcaacaagcagctgacttgatttccagaactgctgtt
gttatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgctgtatgaa
tatctgggtgaagaataccctgaagtactgggcagcattcttggagcactgaaggctatt
gtaaatgtaataggtatgcataagatgacaccaccaattaaagatctcttgcctagactc
acgcccatcttaaagaacaggcatgaaaaagtacaagaaaattgtatcgaccttgttgga
cgaattgctgacaggggagctgaatatgtgtctgcaagagagtggatgaggatttgcttt
gagcttttagaactcttaaaagctcacaagaaagctattcgaagagctactgtcaacact
tttggttacattgcaaaggccattggcccccatgatgtactggctacgcttttaaacaac
ctcaaagttcaggaaaggcagaacagagtgtgcactactgtagccattgccattgttgca
gagacgtgctcccccttcacagtactccctgctttaatgaacgaatacagagttcctgaa
ctcaatgttcagaatggagtgttaaaatcgctctccttcttgtttgagtatattggtgaa
atgggaaaagactacatctatgctgtaacgcctttacttgaggatgcgttaatggatagg
gaccttgtgcaccgacagacggctagtgcagtggtacaacacatgtctcttggtgtgtat
ggatttggctgtgaagactctctgaaccacttactgaactatgtatggcctaatgtgttt
gagacatctccccatgtaatccaggcagtaatgggagctctggagggcctgagagtggct
attggaccatgcagaatgttgcagtattgcttacagggcctctttcacccagctcgcaaa
gtcagagatgtgtattggaaaatttacaactccatctacattggctcccaggacgcgctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgatacgaactt
gactacatcttgtaa
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integrated database retrieval system
