Peromyscus leucopus (white-footed mouse): 114705256
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Entry
114705256 CDS
T07241
Symbol
Col3a1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04611
Platelet activation
pleu04820
Cytoskeleton in muscle cells
pleu04926
Relaxin signaling pathway
pleu04933
AGE-RAGE signaling pathway in diabetic complications
pleu04974
Protein digestion and absorption
pleu05146
Amoebiasis
pleu05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114705256 (Col3a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
114705256 (Col3a1)
09152 Endocrine system
04926 Relaxin signaling pathway
114705256 (Col3a1)
09154 Digestive system
04974 Protein digestion and absorption
114705256 (Col3a1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
114705256 (Col3a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
114705256 (Col3a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
114705256 (Col3a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114705256 (Col3a1)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114705256 (Col3a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
114705256
NCBI-ProteinID:
XP_028742889
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Position
13:complement(64543212..64579555)
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AA seq
1465 aa
AA seq
DB search
MMSFVQSGTWLLLALFHPTFIWAQQTNVDELGCNHLGQSYESRDVWKPEPCQICVCDSGS
VLCDDIICDDDPPDCPNPEIPFGECCAICPQPSTPAPPLPDGHGPQGPKGDPGPPGIPGR
NGDPGLPGQPGLPGPPGSPGICESCPTGGQNYSPQYDSYDVKSGVGGGGIGGYPGPAGPP
GPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRP
GERGLPGPPGIKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAPGPM
GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEIGPAGSP
GSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPGAPGLMGARGPPGPA
GTNGIPGQRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLP
GAAGERGAPGFRGPAGPNGIPGEKGPAGERGGPGPAGPRGTPGEPGRDGAPGSPGVRGVP
GSPGGPGNDGKPGPPGSQGEIGRSGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP
GGPGLPGPAGKNGETGPQGPPGPTGPAGDKGESGPPGPQGLQGIPGTGGPPGENGKPGEP
GPKGEAGAPGAPGGKGDSGAPGERGPPGNAGTPGLRGGAGPPGPEGGKGPAGPPGPPGAS
GSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGAPGKDGPRGPTGPIGPPGPAGQPGDK
GEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGAP
GPAGPAGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGPSGAP
GKDGPPGPAGNSGAPGNPGVAGPKGDAGQPGEKGPPGAQGPPGSPGPLGIAGLTGARGLA
GPPGMPGPRGSPGPQGIKGESGKPGTSGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGSD
GQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPSGAPGPA
GARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQGAVGSPGPAGPR
GPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGG
GAAALGGGGEKSGGFSPYYGDEPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARN
CRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPMTVPRKNWWTDSAA
EKKHVWFGESMNGGFQFSYGNPDLPEDVLDVQLAYLRLLSSRASQNITYHCKNSIAYMDQ
ASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCAKHTGEWSKTVFEYRTRKALRLPI
IDIAPYDIGGPDQEFGVDIGPVCFL
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaagtgggacctggcttcttctcgctctgtttcatcccactttt
atttgggcacagcagaccaatgtagatgaattgggatgcaaccaccttggtcagtcctat
gagtctagggatgtttggaagccagaaccatgccaaatatgtgtctgtgattccggatct
gtcctctgcgatgacataatatgtgacgatgatccacctgactgccccaacccagagatt
ccatttggagaatgttgtgcaatatgcccacagccttccacacccgctcctccccttcct
gatggtcatggacctcaaggccccaagggagatccgggtcctcctggcattcctgggaga
aatggtgaccctggccttccaggacaaccaggtctccctggacctcctggctctcctgga
atctgtgaatcatgtccaactggtggtcagaattattctccccagtatgactcatatgat
gtcaagtctggagtaggaggaggaggaattggtggctatcctgggccagctggtccccca
ggccctccaggtccccctggttcttctggacatcctggctcccctggttctccaggatac
caaggtccccccggtgaacctggtcaagctggtcctgctggccctccaggacctcctggt
gctattggtccatctggtcctgctggaaaggatggagagtcaggcagacctggacgacct
ggagaacgtggactgcctggacctccaggtatcaaaggcccaagtggcatgcctggattc
cctggtatgaaaggacacagaggctttgatggacggaacggagaaaagggtgaaacgggt
gctcctggattgaagggtgaaaatggtcttccgggagataacggagctcctggccccatg
ggtcccagaggtgctcctggtgagcgaggacggccaggccttcctggagctgcaggtgct
cgaggcaatgatggtgctcggggcagtgatggccagccaggtccccctggtcctcccgga
actgcaggattccctggatcccctggtgctaagggtgaaattggacccgcagggtcccct
ggctcaaatggatctccaggacaaagaggggaacctggaccacaaggacatgctggtgct
caaggccctcctggccctcctggaaacaatggcagtcctggcggcaaaggtgaaatgggt
cctgctggcattcctggagctcctggactaatgggagcgaggggtccccctggaccagct
gggactaatggtatacccggccagcgaggtccttcaggtgaacccggcaagaacggtgcc
aagggagagccgggagcccgtggtgaacggggagaagctggttccccaggaatcccagga
cctaagggtgaagacggcaaagatggatcccctggggaacctggtgcaaatggacttcca
ggagctgctggagaaaggggtgctcctggcttccgaggacccgcagggccaaacggcatc
ccaggagaaaagggtcctgctggggagcgtggtggcccaggtcctgcagggccccgagga
acgcctggagagcctggacgagatggagccccaggaagcccaggagtgaggggtgtgccc
ggcagcccaggaggaccaggcaatgatgggaaaccaggacctcccggaagtcaaggagaa
attggccgctctggtccacctggcccatctggcccccggggtcagcctggtgtcatgggt
ttccctggtcctaaaggaaatgatggtgctcctggcaagaatggagaacggggtggccct
ggaggacctggccttccaggccctgctggaaagaatggtgaaactggacctcagggtccc
ccaggccctactggtccagctggtgacaagggagagtccggaccccctggtccacaagga
ttacaaggaatacctggtaccggtggtcctccaggagaaaatggaaagccaggtgaacca
ggtccaaagggtgaagctggtgcacctggagctcctggtggcaagggtgactccggtgcc
cctggagaacggggaccccctggaaatgcagggacccctggtcttagaggaggagctgga
ccccctggccctgagggaggaaagggccctgctggtccccctggtccccctggtgcttct
ggttctcctggtctacaagggatgcctggagagagaggaggtcctgggagtcctggtcca
aagggtgaaaagggtgaaccaggaggtgcaggagctgatggagctccaggaaaggatggg
ccaaggggtcctactggtcctattggcccccctggcccagctggtcagcctggagataag
ggtgaaggtggtgcccctggacttccgggtatagctggacctcgaggtggcccgggtgag
agaggtgaacacgggcctccaggacctgcgggcttccctggtgctcctggacagaatggc
gaacctggtgctaaaggagaaagaggtgcccctggagagaagggtgagggaggcgctcct
ggacctgcagggcccgctggaggttctggacccgctggtcctcctggtcctcagggtgtc
aagggtgaacgtggcagtcctggtggtcctggtgctgctggctttcctggtgggcgtggt
cttcctggtcctcctggtaacaatggtaacccgggccctccagggcctagcggtgctcct
ggcaaggacggccctccaggtcctgctggtaacagtggtgctcctggcaaccctggagta
gctggaccaaaaggcgatgctggccaacctggagagaagggaccacctggtgctcaggga
cctcctggatccccaggcccacttggaattgcaggacttacaggagcacgaggtcttgct
ggaccaccaggcatgccaggtcccaggggcagccctgggcctcaaggtatcaagggtgaa
agtggaaaaccgggaaccagtggccataatggggaacgaggtcctcctggaccccaaggt
cttcctggtcaacctggtacagctggtgaacctgggagggatggaaaccctggatcagac
ggtcagccaggaagagatggatctcccggtggcaagggtgatcggggtgaaaacggttct
cctggtgctccgggcgctcctggtcatccaggcccacctggtcccgtgggtccatctggg
aaaagcggagacagaggcgaaaccgggcctgctggtccttctggtgctccaggacctgct
ggagctcgaggtgctcctggtccccaaggtccacgaggagacaagggtgaaactggtgag
cgtggttccaatggcatcaaaggacaccgaggattccccggcaatccaggtcccccaggt
tctcccggtgctgccggtcaccagggtgcagttggtagtcctggacctgcaggtcccaga
ggaccagttggaccacatgggcctcctggaaaagatggaacgagtgggcatccgggtccc
attggaccgccaggacctcgaggcaacagaggtgaaagaggatctgagggctcgccaggc
caccctgggcagccaggcccccctggacctcctggtgcacctggtccttgctgtggtgga
ggtgctgctgcccttggaggtggaggtgaaaagtctggtggattttcaccatattatggt
gatgaaccaatggatttcaagatcaacaccgaggagattatgtcttcactcaaatctgtc
aatggacaaatagagagtctcattagtcctgatggttctcgtaaaaaccctgctcggaac
tgcagagacctgaaattctgtcacccagaactcaagagtggagaatattgggttgatcct
aaccaaggttgcaagatggatgctatcaaagtgttctgtaacatggaaactggggaaaca
tgtataaatgccagccctatgactgttccacggaagaactggtggacagactcggctgct
gaaaagaaacatgtttggtttggagaatctatgaatggtggatttcagttcagctatggc
aatcccgatcttcctgaagatgtccttgacgtacagctggcatacctcaggctcctctcc
agcagggcctcccagaacattacataccactgcaagaacagtattgcctacatggatcag
gccagtggcaatgtcaagaagtctctaaagctgatgggctccaacgaaggggaattcaag
gctgaaggaaacagcaaattcacttacacagttctggaggacggctgtgctaaacacacc
ggggaatggagcaaaacagtctttgaatatcgaacacgcaaggccctgagactacccatc
atagacatcgcaccctatgacatcggtggtcccgatcaagaatttggtgtggacattggc
cctgtttgctttttataa
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integrated database retrieval system
