Peromyscus leucopus (white-footed mouse): 114708534
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Entry
114708534 CDS
T07241
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04151
PI3K-Akt signaling pathway
pleu04510
Focal adhesion
pleu04512
ECM-receptor interaction
pleu04518
Integrin signaling
pleu04974
Protein digestion and absorption
pleu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
114708534 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114708534 (Col2a1)
04518 Integrin signaling
114708534 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114708534 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
114708534 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
114708534 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pleu00536
]
114708534 (Col2a1)
Glycosaminoglycan binding proteins [BR:
pleu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114708534 (Col2a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
114708534
NCBI-ProteinID:
XP_028747715
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All DBs
Position
20:6131675..6161330
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AA seq
1485 aa
AA seq
DB search
MIRLGAAQSLVLLTLLVAAVLRCQGLDDEEAGSCLHDGQTYKDKDVWKPTTCSICVCDTG
NVLCDDIICEDKDCLNPEVPFGECCPICTAELPPASGQLGPKGQKGEPGDIKDIVGPRGP
PGPQGPAGEQGPRGDRGEKGEKGALGPRGRDGEPGTPGNPGPPGPPGPPGPPGLTGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGTPGEPGEPGVSGPMGP
RGPPGPAGKPGDDGEAGKPGKAGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE
AGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPIGP
AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQMGEPGIAGFKGEQGPKGETGPTGPQGA
PGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP
KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGVPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP
SGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARGL
PGTPGTDGPKGAPGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGTRGLTGPIGPPGPAGANGEKGDVGPAGPAGSTGARGAPGERGETGPPGPAGFAGPPGA
DGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDTGSPGRAGDPGLQGPAGPSGEKGEPGD
DGPPGSDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGP
VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGAPGPAGP
TGKQGDRGESGAQGPMGPSGPAGARGIPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGL
PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGP
PGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEASSTLRQHDVEVDATLKS
LNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGE
TCVYPNPATVPKKNWWSSKGQKKHVWFGETINGGFHFSYGDGNLAPNTANVQMTFLRLLS
TEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHT
GKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctgcccaatcgctggtgctgctgacgctgctcgtcgccgcggtc
cttcggtgtcagggcctggatgacgaggaggctggcagctgtttgcacgatgggcaaacg
tacaaagataaggatgtatggaagcccacgacctgcagcatctgtgtgtgtgacactggc
aatgtcctctgcgacgacataatctgtgaagacaaagactgcctcaaccccgaagtcccc
ttcggagagtgctgccccatctgcacagctgaactcccccctgccagtgggcaactaggg
ccaaagggccagaaaggagaacctggagacatcaaggatatcgtaggacccagaggaccc
cctggccctcagggacctgctggtgaacaaggacccagaggtgaccgtggtgaaaaggga
gaaaagggtgcacttggacctcgtggccgagatggagagcctggtacccctggaaatcct
ggtccccctggccctccaggcccccctggcccccctggccttactggaaactttgcggct
cagatggctggaggattcgacgagaaagctggcggcgcccagatgggggtgatgcagggt
ccaatgggccccatgggacctcgaggacccccaggcccggccggtgcccctggccctcaa
ggatttcaaggcactcctggtgaacctggcgagcctggcgtctctggtcccatgggtccc
cgtggtcctccaggccctgctggaaaacctggtgatgacggtgaagctgggaaacctgga
aaagcgggggaaagaggccttcctggccctcagggtgctcgtggattccccggaacccca
ggccttcctggtgtcaaaggtcacagaggttacccaggcctcgatggtgctaagggagaa
gctggtgctccaggtgtgaagggtgagagcggttcccccggtgagaacggttccccgggt
ccaatgggtccccgaggcctgcctggtgagagaggacggactggccctgctggtgctgct
ggtgcccggggcaacgacggccagccgggccctgctggacctccgggtcctatcggtcct
gcaggtggtcctggcttccctggtgctcctggcgccaagggggaagctggccccactggt
gcccgtggtcctgaaggtgctcaaggtcctcgtggcgagcctggcaatcctgggtcccct
ggacccgcaggcgcttctggtaacccaggaactgacggcattcccggagctaaaggatct
gctggagctcctggaattgctggcgcccctggcttccctgggccccgtggccctcctggt
cctcaaggtgcaactggtcctctgggccccaaaggccagatgggtgagcccggcattgct
ggcttcaaaggcgaacagggccccaagggggaaaccggccctactgggccccagggagcc
cctggtcctgctggtgaagaaggtaaaagaggcgcccgaggggagccaggcggtgccggg
cccatcggcccccctggagaaagaggtgcccctggcaaccgcggtttcccgggtcaagat
ggtctggcaggtcccaagggtgcccctggagagcgagggcccagtggcctggctggtccc
aagggagccaatggtgacccgggtcgtcctggagaacctggccttcctggagcccggggt
cttacaggtcgtcctggtgatgctggtcctcaaggcaaagttggtccttctggagtccct
ggtgaagacggccgccctggacctcctggtcctcagggagctcgtgggcagcctggtgtc
atgggtttccctggccccaaaggtgccaacggcgagcctggcaaggctggtgagaagggg
ctggctggtgctcctggtctgagaggtctgcctggcaaggacggggagacaggagctgca
ggaccccctggccctgctggacccgctggtgaacgaggcgagcagggcgctcctgggccc
tccgggttccagggacttcctggccctcccggtcccccaggtgaaggtggaaaacaaggt
gaccagggtattcctggtgaagctggagcccctggtcttgttggtcccaggggtgaacga
ggtttcccaggtgaacgtggctctcctggcgcacaaggcctgcagggcgcccgtggtctg
cctggcactcccggtactgacggtcccaaaggtgcacctggtccagatggcccccctggg
gctcagggtcctccaggtctacagggaatgcctggcgagaggggggcagctgggattgct
ggacccaagggagacagaggcgatgttggtgagaaaggcccagagggagctcctggaaag
gacggcacacgaggtctgactgggcccatcgggcccccaggtccggcaggtgccaatggc
gagaagggggatgtcggccctgctggcccggcaggaagtactggtgctcgtggtgccccg
ggtgaacgtggagagaccgggccacctggacctgctggattcgctggacctcctggtgct
gacggccagcctggcgccaagggtgagcaaggagaggccggacagaaaggagacgctggt
gcccccggtccccaaggcccctctggagctcctgggccacagggtcctactggagtgact
ggtcctaagggagcccgaggtgcccaaggccccccgggagccaccggattccctggagct
gctggccgcgttggacccccaggctctaatggcaaccctggacctcctggtccccctggt
ccttctggaaaagatggtcccaaaggtgctcgaggagacactggttcccccggccgagct
ggtgaccctgggcttcaaggtcctgcaggaccttctggcgagaaaggagaacctggagat
gatggcccccctggttctgatggtcctccaggtccccaggggctggctgggcaaaggggc
atcgttggtctgcctggacagcgtggtgagagaggattccccggccttcccggcccatcg
ggtgagcctggcaagcagggtgcccctggtgcatctggagacagaggtcctcctggcccc
gtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagccctggt
gctgacggaccccccggcagagatggtgcagctggagtcaagggcgaccggggtgagact
ggtgccctgggcgcccctggggctcccgggccccctggagctcctggccctgctggccca
actggcaaacaaggagacagaggagagtctggtgcacaaggtccgatgggtccctcagga
cccgctggagcccggggaatcccaggccctcaaggcccccgaggtgacaaaggagaaact
ggagaggctggcgagaggggactgaagggtcaccgaggcttcactggactgcagggtctg
cctggccctccgggtccttctggagatcagggtgcttctggcccggctggtccttctggc
cctagaggtccacctggccccgtcggtccctctggcaaagatggctctaacggaatccct
ggccccattgggcctcctggtccccgtggacgttcgggcgaaactggccctgctggtcct
cctggaaatcctggtccccctggccctccaggtccacctggtcctggcatcgacatgtca
gcctttgccggcttaggccagagagagaagggccccgatcccctgcagtacatgcgggcc
gatgaggcatccagtaccctaagacagcacgacgtggaggtggacgccacgctcaagtca
ctcaataaccagatcgagagcatccgcagccccgatggctcccgcaagaatcctgctcga
acctgccaagacctgaaactctgccacccagagtggaagagcggagactactggattgac
cccaaccagggctgcaccttggacgccatgaaagttttctgcaacatggagacaggcgag
acttgcgtctaccccaacccggcgacggtgcccaagaagaactggtggagcagcaagggc
cagaagaagcatgtctggtttggagagaccatcaacggcggcttccacttcagctacggc
gatggcaacctggctcccaacaccgccaacgtccagatgacgttccttcgtctgctgtcg
accgagggctcccagaacatcacttaccactgtaagaacagcatcgcctatctggacgaa
gcagccggcaacctcaagaaggccttgctcatccaaggctccaacgatgtggagataagg
gccgagggcaacagcaggttcacgtacaccgctctgaaggatggctgcacgaaacacacc
ggtaagtggggcaagactgtcatcgagtaccggtcacagaagacctcacgccttcccatc
attgacattgcacccatggacattggagggcccgagcaggagtttggtgtggacataggg
cccgtctgcttcttgtaa
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