Peromyscus leucopus (white-footed mouse): 114709074
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Entry
114709074 CDS
T07241
Symbol
Snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114709074 (Snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pleu03041
]
114709074 (Snrnp200)
Enzymes [BR:
pleu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114709074 (Snrnp200)
Spliceosome [BR:
pleu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114709074 (Snrnp200)
Complex C
U5 SnRNP specific factors
114709074 (Snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
114709074
NCBI-ProteinID:
XP_028748548
LinkDB
All DBs
Position
4:103249793..103278228
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDLLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
GHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgactgcccgcagtctgcagtacgagtacaaggcgaactcaaatcttgtg
ctccaagctgaccgctctcttatcgaccggacccgccgggatgagccgacaggagaggtt
ctgtccctggttgggaagttagagggaacccgtatgggagataaggctcaacggaccaaa
ccacaaatgcaggaggaaagacgggccaagagaagaaagcgtgatgaggaccggcacgac
atcaacaagatgaaaggttataccctgctctcagagggcattgatgaaatggtgggcatc
atctataagcccaaaactaaagagactcgggagacctatgaggtgctgctcagcttcatc
caggctgctcttggagaccagcctcgtgatatcctttgtggggcagctgatgaagttctg
gctgtcctgaagaatgaaaagcttcgagacaaggagagaagaagggagattgacctgctg
ctgggtcagacagatgataccagataccatgtgctagtgaacttgggcaaaaagatcaca
gactacggtggagacaaggagatccagaatatggatgacaacattgatgagacctatggt
gtgaatgtacaatttgagtctgatgaggaggaaggtgatgaagatgtgtatggggaagtc
cgagaagaagcttctgatgatgacatggaaggagatgaggctgttgtgcgctgcaccctc
tcggctaatctcgtagcctcgggagagctgatgagttcgaagaagaaggatttacaccct
cgggatattgatgcattctggctccagcgacagctcagtcgtttctatgatgatgccatt
gtgtcgcagaagaaagcagatgaggtgttggagattttgaagacagcaagtgatgaccgg
gaatgtgagaaccaactggttctgctccttggttttaacacttttgacttcattaaagtg
ttgcggcagcacaggatgatgattttatactgtaccttgttggccagtgctcagagtgaa
gctgagaaggaaaggatcatgggaaagatggaagctgacccagagctttccaagttcctc
tatcagctccatgagactgagaaggaagacctgatcagagaagaaaggtcccggagagag
agagtccgtcagtcccgaatggacacagatctagagaccatggatttggaccaaggtgga
gaggctctggctccacgtcaggtcctggatttggaggaccttgtttttacacaagggagc
cacttcatggccaacaagcgctgccagcttcctgatgggtccttccgacgccagcggaag
ggctatgaggaggtgcatgtgcctgccttgaagcccaagcccttcggctcagaagaacaa
ctgcttcctgtggagaagctgccaaagtatgcccaggcaggatttgagggcttcaaaaca
ctgaaccggatccagagtaaactctaccgtgctgccctggagacagatgagaatctgctg
ctgtgtgctcctactggtgctgggaagaccaatgtggccctgatgtgtatgctgcgagag
atagggaaacacatcaacatggatggcacgatcaatgtagatgacttcaagatcatctac
atagctcctatgcgctccttggtgcaggagatggtgggcagctttggaaagcgcctggcc
acgtatggcatcaccgttgctgagctgactggagatcaccagctgtgcaaggaagaaatc
agtgccacacagatcatcgtctgcacccctgagaagtgggacatcatcacacgcaaaggc
ggggagcgtacctatactcagctggtgcggctcattgtcttggatgagatccatcttcta
catgatgacagaggtcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaagaagatgtccgactcattggtctcagcgctaccctccccaactatgaagat
gtggcgacctttctgcgtgttgaccctgccaagggcctcttctactttgacaacagcttc
cgcccagtgcctctggaacagacatatgtgggcatcacagagaaaaaagctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtccactctcgcaaagaaactgggaagacagccagggcaatccgtgac
atgtgcctggagaaggacaccttgggtctgtttcttcgagagggttctgcctccactgaa
gtccttcgtacagaagcagaacagtgcaagaacttggagctgaaggatcttttgccctat
ggctttgctattcatcatgcaggcatgaccagagttgatcgaacacttgttgaagatctt
tttgctgacaaacatattcaggttttggtttccacagcaactctggcttggggtgtaaat
ctccctgcacatacggtcatcatcaaaggcacccaggtgtacagtccagagaaggggcgt
tggacagagctgggagcactggacattctgcagatgctgggccgtgctggacgacctcag
tatgacaccaagggtgaaggtatactcatcacgtctcatggagagctacagtactacctc
tctctcctcaaccagcaacttcctattgagagccagatggtatccaagctgcctgacatg
ctcaatgccgagattgtgctggggaacgtccagaacgcaaaggatgcggtgaactggctg
ggctacgcctacctgtacatccgaatgctccgctccccgaccctctatggcatctctcat
gatgacctcaaaggagatctcttgctggaccagcgccgactagatcttgttcacactgct
gctttgatgctggacaagaacaatctggtcaagtatgacaagaaaacaggcaactttcag
gtgacagaacttggtcggatagctagtcactactatatcaccaatgatactgtgcagacc
tacaaccagctgctgaagcctactctgagtgagattgagcttttccgagtgttctccttg
tcctcggagttcaagaacatcactgtgagagaggaggagaagctggagctgcagaagttg
ctggagagggtgcccatccctgtaaaggagagcatcgaagaacccagtgctaagatcaat
gtgctcctccaagccttcatctcacagctgaaactggaaggctttgcactgatggctgac
atggtgtacgtgacacagtctgctggccgcttgatgcgtgcaatcttcgaaattgttctg
aaccgaggttgggcacagcttacagataagaccctgaatctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctcttcgtcagttccgtaaacttcccgaggaagtagtg
aagaagattgagaagaaaaacttcccctttgagcggctctatgacttgaatcataatgag
ataggtgaacttatccgaatgccaaagatggggaagaccatccacaagtacgtccatctc
ttccccaagttggagttgtccgtgcacctgcagcctattacacgctccaccctgaaagta
gagctgactatcacaccagatttccagtgggatgaaaaggtccatggttcatcagaggca
ttttggattctagtggaggatgtggacagtgaggtgattctgcaccatgaatattttctg
ctgaaggccaaatatgcccaggatgagcaccttattacgttcttcgtcccagtcttcgaa
ccactgcccccacagtacttcatccgagtggtgtctgaccgctggctctcttgtgagacc
cagctgcccgtctctttccggcacctgatccttccagagaagtacccccctccaactgaa
ctgttggacctgcagccattgccggtatctgctctaagaaacagtgcttttgagagcctt
taccaagacaaatttcctttcttcaatcccatccagactcaagtttttaacaccgtgtac
aacagtgatgataacgtgtttgtgggggcccccacgggcagcgggaagaccatctgtgca
gagtttgccatcctgcggatgctgctgcagaattctgaggggcgctgtgtctacattacc
cccatggaggctctggcagagcaggtgtacatggactggtatgagaagtttcaggacagg
ctcaacaagaaggtggtgctgctgacgggggagactagcacagacttgaagcttctgggc
aaaggcaacatcatcatcagtacccctgagaagtgggacatcctttcccggaggtggaag
cagcgcaagaatgtccagaacattaacctctttgtggtggatgaggtccaccttattggg
ggcgagaatgggcctgtcttggaagtgatctgctcccggatgcgctacatctcctcccag
attgagcggcccattcgcattgtggcacttagctcgtccctctccaatgccaaggatgtg
gctcactggctgggctgcagtgccacctccaccttcaacttccaccctaatgtgcgccct
gtacctttagaattgcacatccagggcttcaacatcagccatacccagactcgcctgctg
tctatggccaagcctgtgtaccatgctatcaccaaacactcacccaagaagcctgtcatc
gtttttgtcccatctcgcaagcagacccgtctcaccgcgatagacatcctcactacctgt
gcagcagacatccagcggcagaggttcttgcactgtactgagaaggatctgatcccttac
ctggagaagttaagtgacagcacgctcaaggagacactgctaaatggggtgggctaccta
catgaagggctgagccccatggagaggcgcctggtagagcagctcttcagctcaggggcg
atccaggtggtggtggcttctcgaagtctctgctggggtatgaatgttgctgctcatcta
gtgatcatcatggatacgcagtactacaatggcaagatccatgcctatgtggactacccc
atctatgatgtgcttcagatggtgggccatgccaaccgccccctgcaggatgacgagggg
cgctgtgtcatcatgtgtcaaggctctaaaaaggattttttcaaaaagtttttatatgag
ccattgccggtagagtctcacctggaccactgtatgcatgaccacttcaatgctgagata
gtcaccaagaccattgagaacaagcaggatgctgtggactacctcacctggacctttttg
tatcgccgaatgacacagaaccccaattactacaaccttcagggcatatctcatcgtcac
ttgtctgaccacttgtcagagctggtggagcagaccctcagtgacctggaacagtccaaa
tgcatcagcattgaggatgagatggatgtggcccctctgaacctgggcatgattgctgcc
tactattacataaactacaccaccatcgagctcttcagcatgtctctcaatgctaaaacc
aaggttcgaggacttattgagattatttccaacgcggcagagtatgagaacattcccatc
aggcatcatgaagacaacctgctacgccagttggctcagaaggttccccacaagctgaat
aaccccaagttcaatgatccgcatgtgaagaccaacctgctgctgcaggctcacctgtcc
cgaatgcagctgagtgctgaactgcagtcggacacggaggaaatccttagtaaggcaatc
cggctcattcaggcctgtgtggatgtactctctagcaatgggtggctcagccctgctctg
gcagccatggaactggctcagatggtcacccaagccatgtggtctaaggactcctatctg
aagcagctgccacacttcacctcagagcatatcaaacgttgcacagataagggagtggag
agtgtttttgacatcatggagatggaggatgaagaacggaacgcattgcttcagttgact
gacagccagatcgcagatgtggcccgcttttgtaaccgctacccgaatattgaactgtcc
tatgaagtggtggataaagacagcatccgcagtggtgggccagttgtggtgctagtgcaa
ctggagcgagaggaggaagtcacaggccctgttattgcacctctcttcccacagaaacgt
gaagagggctggtgggttgtgattggagatgccaagtccaacagcctcatctccatcaag
aggctgaccctgcagcagaaagccaaggtgaagctagactttgtggccccagccacaggt
ggccacaactataccctgtacttcatgagtgatgcatacatgggatgtgaccaggagtat
aaattcagtgtggatgtgaaagaagctgaaacagacagtgattcagattga
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integrated database retrieval system
