Peromyscus leucopus (white-footed mouse): 114709246
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Entry
114709246 CDS
T07241
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu01524
Platinum drug resistance
pleu03430
Mismatch repair
pleu05200
Pathways in cancer
pleu05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114709246 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
114709246 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
114709246 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
114709246 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114709246 (Msh6)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114709246 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
HORMA
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
114709246
NCBI-ProteinID:
XP_028748820
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All DBs
Position
22:complement(17304281..17321785)
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AA seq
1367 aa
AA seq
DB search
MSRQSTLYSFFSKSPALGDAKKAAAGASCEGGAPAAPAASSGACASRGGDAAWSEAAAES
RPAAVSTPSPEAKNLNGRPRRSASPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYDHPFD
GTFIRKKGKTVRVHVQFFDDSPTRGWVNKRLLKPYTGSKSKEAQKGGHFYSSKSEILRAM
QRADEALSKDKIKRLELAVCDEPSEPEEEEETEVYTASVSDKSEEDNHPNESEEEVQPKG
QGPRRSSRQVKKRRVISDSESDIGGSDVEFKPDTKQDGSSDEMSSGAGDSDSEGLGTTTK
GAPKRKRTVAGHSALKRKSSKKEPPSATKRATRILSETKSTLSAFSASPNSESQTHVSGG
DDSSGPTVWYHETLEWLKPEKRRDEHRRRPDHPDFNPCTLYVPEDFLNTCTPGMRKWWQI
KSQNFDLVIFYKVGKFYELYHMDAVIGVNELGLVFMKGNWAHSGFPEIAFGRFSDSLVQK
GYKVARVEQTETPEMMEARCRKMAHVSKFDRVVKREVCRIITKGTQTYGVLEGEPSENHS
RYLLSLKEKEEDSSGHTRVYGVCFVDTSLGKFFLGQFLDDRHCSRFRTLVAHYPPVQILF
EKGNLSTETKTVLKGSLSSCLQEGLIPGSQFWDATKTLRTLLEDGYFTGKVGEDRSAGTV
LPPVLKSMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFENYFPLDS
DMVTTVRPGALFTSANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLL
KQWLCAPLCSPGAISDRLDAVEDLMALPDKITEVADLLKKLPDLERLLSKIHNIGSPLRN
QNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVISKIIGLMEDVADDFKSKTLKQVVTPQ
TKSPEGRFPDLTEELDRWYTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQGLLEY
LEKQRSRIGCRTIVYWGIGRNRYQLEIPDSFTTRNLPEEYELKSTRKGCKRYWTKTIEKK
LANLINAEERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSQGGDGPM
CRPVIVLPREDTHPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEAEENGKAYCVLVT
GPNMGGKSTLIRQAGLLAVMAQMGCYVPAEVCRLTPVDRVFTRLGASDRIMSGESTFFVE
LSETASILRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV
EDYSKNVSVRLGHMACMVENECEDPSQETITFLYKFIEGACPKSYGFNAARLANLPEEVI
QKGHRKAREFEKMNQSLRLFREVCMASERPTVDAEAIHRLLALIEEL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacaaagcaccctgtacagcttcttctctaagtccccggcgctcggcgacgcc
aagaaggccgcggccggggcctcatgcgaaggcggcgcccccgccgcccccgccgcctcc
tccggggcctgcgcttcccgcggcggggatgcggcctggagcgaggctgcagctgagtcc
cggcccgcggcggtgtccaccccgtcgcccgaggccaagaacctcaacggacggccgcgg
aggtcggcctcgccggccgtccccgccagttcttgtgacttctcaccaggtgatttggtt
tgggctaagatggaaggttacccctggtggccttgcctggtttatgatcacccctttgat
ggaacattcatccggaagaaagggaaaacggtccgtgttcatgtacagttttttgatgac
agcccaacaaggggctgggttaacaaaaggctgttgaagccatatacaggttcaaagtcc
aaggaagcccaaaagggaggtcatttctacagttcaaagtctgaaatactcagagcaatg
cagcgtgcagatgaagccttaagtaaagacaagattaagaggcttgagttggcagtgtgt
gatgagccttcagagccagaagaggaggaagagacagaggtgtacacagcttctgtatct
gataagagtgaagaggataaccatccaaatgaaagcgaagaagaagtacagcctaagggg
caggggcctaggcgaagcagccggcaagtgaaaaagcgcagggtcatatcggattccgag
agtgacatcgggggctccgacgtggaattcaagccagacactaagcaggatggaagcagc
gacgaaatgagcagtggggctggagacagtgatagcgaaggcctgggcaccaccaccaaa
ggtgctccaaagcggaagaggacagtggccggtcacagtgcattgaaaaggaagagttca
aagaaggaacctccctcagccaccaaacgagcaactcgaattttgtcagaaaccaagagt
accttgagtgctttctctgcctctccaaattctgaatcccaaacccacgtcagtggggga
gatgacagtagtggacccactgtctggtaccatgagactttagagtggcttaagccagaa
aagagaagagatgagcacaggagacggcccgatcaccccgattttaatccttgcacactg
tatgtgcctgaagatttccttaatacttgtactccagggatgaggaagtggtggcagatt
aagtctcagaactttgatcttgtcatcttttataaggtgggcaagttttacgaattgtat
cacatggatgctgtcattggagtcaacgagctggggctggtcttcatgaagggcaactgg
gcccattctggttttccggagattgccttcggccggttttcagactccctggtgcagaag
ggttataaagtagcccgcgtggaacagactgagactccagagatgatggaggcacggtgc
cggaagatggcacacgtgtccaagtttgacagagtggtgaagagagaggtgtgtaggatc
atcaccaagggcacacagacgtatggcgtgctggaaggtgagccctctgagaaccacagt
aggtatcttcttagccttaaagagaaagaggaggattcttccggtcacacccgtgtatat
ggtgtgtgcttcgtggacacttccctgggcaagtttttcctgggtcagtttttggatgat
cgccattgttcgagatttaggactcttgtggcacactatcctccagtacagattttgttt
gagaaaggaaacctctcaacagaaaccaaaacagtcctgaagggttcattgtcctcttgt
cttcaggaaggtctgataccaggttcccaattttgggatgccactaagacactgagaaca
ctccttgaagacggctatttcactgggaaggtaggcgaagaccgcagtgcagggacagta
ctgcccccggtacttaagagtatgacctccgagtcggactccctcgggctgaccccagga
gagaagagtgaattggccctctctgctctaggtggctgtgttttttacctcaaaaaatgc
ctgatcgatcaggagcttctgtcaatggccaattttgaaaactattttcccttggattct
gacatggtcaccacggtaagacctggtgctctctttactagtgccaatcagcgaatggtg
ctagatgcagtgacgttgaacaacttggagattttcctgaatgggaccaatggttctact
gaagggactttgctcgagaggcttgacacttgccatactccctttggcaagcggctccta
aaacaatggctttgtgcccccctctgcagccctggtgccatcagtgatcgcttagatgct
gtggaagacctgatggctctgcctgacaaaatcactgaagttgcagacctcctaaagaag
ctaccagatcttgagaggctcctgagtaagatccataatattggctctcctctaaggaac
caaaaccacccagacagcagggctataatgtatgaagaaaccacatacagcaaaaaaaag
atcattgattttctttctgctctagaaggattcaaagtaataagtaagattatagggctt
atggaggatgtcgctgatgattttaagtccaaaacccttaagcaggttgttactccacag
acaaagagcccagaaggccgctttcctgatctgactgaagaactggaccgatggtatact
gcttttgaccacgagaaggctcgaaagactggactcattactccaaaggcagggtttgac
tctgattatgaccaagcgcttgctgacatacgagagaatgaacagggcctcctggagtac
ttagaaaaacagcgtagtcggattggctgcaggaccatagtctactggggaattggtagg
aaccgttaccagttggagattccagacagttttactacccgtaacttaccagaagaatat
gagttgaaatctactagaaagggctgtaaacgatactggaccaaaacaattgagaagaaa
ttagctaatcttataaatgctgaagaacgtagggacacatctttgaaggactgcatgagg
cggctattctataactttgataaaaattacaaggactggcagtctgctgtagagtgcatt
gcagtgttggatgtcttactgtgcctggctaactatagtcaaggaggtgatggtcctatg
tgtcgaccagtaattgtgttaccaagagaagacacacaccctttcctagagcttaaaggg
tcaaggcatccctgcattacaaagaccttttttggagatgattttattcctaatgacatt
ctaataggctgtgaggaagaagcggaagaaaatggcaaagcctattgtgtgcttgttact
ggaccaaatatggggggcaaatctacactcataagacaggctggtctgttggctgtgatg
gcccagatgggttgttatgtacctgctgaagtgtgtcggctcacaccagtagacagggtg
tttactagacttggggcctcagatcggataatgtcaggtgaaagtacgttttttgttgag
ttgagcgaaaccgctagcatacttaggcatgcaacagcacattctttggtgcttgtggat
gaattaggaagaggtactgcaacttttgatgggacagcgatagccaatgcagttgttaaa
gaacttgctgaaacaataaagtgtcgaacattgttctccacacactatcattcattagta
gaagactattctaaaaatgtttctgtgcgcctaggacacatggcttgcatggtagaaaat
gaatgtgaggatcccagccaggagactattaccttcctctataagttcattgagggagct
tgtcccaagagttacggctttaacgcagcaaggcttgcaaatcttccggaggaagttatt
caaaagggacacagaaaagcaagagaatttgagaagatgaatcaatcattacgactattt
cgggaagtttgtatggctagtgaaaggccgactgtagatgctgaagccatccataggctg
ctggctttgattgaggaattgtag
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