Peromyscus leucopus (white-footed mouse): 114710117
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Entry
114710117 CDS
T07241
Symbol
Clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114710117 (Clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114710117 (Clp1)
Enzymes [BR:
pleu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
114710117 (Clp1)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114710117 (Clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
ATP_bind_1
TniB
MMR_HSR1
AAA_22
AAA_16
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
114710117
NCBI-ProteinID:
XP_028750033
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All DBs
Position
4:complement(61013433..61017686)
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AA seq
425 aa
AA seq
DB search
MSEESNDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaatccaacgatgacaagaagccaacgactaaatttgaactggagcgagaa
acagagcttcgatttgaggtggaggcgtctcagtcagtgcagctagagttgttggctggc
atggcggagatctttggcacggagctgaccagaaacaaaaagtttacctttgatgctggt
gccaaggtggctgttttcacttggcacggctgttctctgcaattgagtggccggaccgag
gtggcttatgtctctaaagacacccctatgttgctctacctcaacactcatacagccttg
gagcagatgcggaggcaggcagaaaaggaagaagagagaggcccccgagtgatggtggtg
ggtcctactgatgtgggcaagtccacggtgtgtcgactgctactcaactatgcagtgcgt
ttgggccgccgtcctacttacgtggagctggatgtgggtcagggctctgtgtccatccct
ggtaccatgggggccctctacattgaacggccagcagatgtggaagaaggtttctccatc
caggcgcctcttgtgtatcattttggctccaccactcctggcaccaacatcaagctttat
aataagattacatcacgtttagccgatgtgttcaaccaaaggtgtgaagtgaatagaagg
gcttctgtgagtggctgtgtcattaacacctgtggctgggtcaagggctctggttaccag
gccctggtgcatgcagcttcagcctttgaagtggatgtggttgtggtgctggatcaagaa
cgactgtacaatgaattgaaaagggacctgcctcattttgttcgaactgtgttgctccca
aaatcagggggtgtggtggaacgctccaaggacttccggcgggaatgtagggatgagcgg
atccgcgagtacttctatggattccgaggctgcttctatcctcatgccttcaatgtcaaa
ttttcggatgtgaaaatctacaaagtaggggcacccaccatcccagactcctgtttacct
ctgggcatgtctcaggaagacaatcagctcaagttagtgcccgtcacccctggcagagat
atggtgcaccatctcctgagtgtcagcactgccgaggggacagaggaaaacctctctgag
acaagtgtggctggattcattgtggtgaccagtgtggacctggaacaccaggtgtttact
gtcctgtctccagccccccgcccactgcctaagaacttccttctcatcatggatatccgg
ttcatggatctcaagtag
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