Peromyscus leucopus (white-footed mouse): 119086363
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Entry
119086363 CDS
T07241
Symbol
Col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119086363 (Col22a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
119086363
NCBI-ProteinID:
XP_037053414
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Position
20:complement(28911334..29144580)
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AA seq
1604 aa
AA seq
DB search
MAVPRGSPSACLLWMLLLWGGDSGCQAQRAGCKSVQYDLVFLLDTSSSVGKEDFEKVRQW
VANLVDTFEVGPDHTRVGVVRYSDRPTTAFELGHFSSREEVKAAARRITYHGGNTNTGDA
LRYITSRSFSAQAGGRPGNRAFKQVAILLTDGRSQDLVLDAAAAAHAAGIRIFAVGVGAA
LKEELDEIASEPKSAHVFHVSDFNAIDKIRGKLRRRLCENVLCPSVRVEGDRFKHTNGGS
KKCTGFDLMDLFSVKEILGKRENGAQSSYVRMGSFPVVQRTEDVFPQGLPDEYAFVTTFR
FRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKAVEYNAVGAMKDAVRVVFRGPRVDDLF
DRDWHKMALSIQAQNVSLYIDCVLVQTLPIEERENIDIQGKTVIGKRLYDSVPIDFDLQR
IVIYCDSRHAELETCCDIPTGPCQVTVVTEAPPAPPQLPTPGSEQIGFLKTINCSCPAGE
KGERGFAGPVGLPGQKGDSGPIGLTGAPGPKGEKGDTGRGPFFQGEKGEKGSMGPPGPPG
RDGNKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPAGQVGTPGLQGERGQRGAPGEKG
ERGLDGFPGKPGETGEQGRPGPPGVAGPQGEKGDVGPPGPPGVPGSVVQKEGLKGEQGAP
GPRGHQGLPGPPGAPGLIGPEGREGPPGPQGLRGKKGEVGPPGTPGALGPQGPPGPPGVP
GLPGPGGPPGLPGELGFPGKPGPSGHMGPPGKDGLDGPPGLPGSKGAPGDPGESGVPGMP
GPRGEVGERGLAGLPGEKGEVGLPGSPGFPGVRGEKGDQGEKGELGLPGLKGAQGEKGEA
GPAGSPGLPGSPSMFTPHPRMPGEQGPKGEKGDPGDPGALGPQGHPGELGPRGPTGPPGA
KGHDGAHGTPGAAGNPGAPGPAGPPGLSGPPGSLGSPGIRGAPGKDGERGEKGTAGEEGS
PGPAGPRGDPGAPGLPGPPGKGKDGEPGLRGPPGLPGPLGTKGDRGTPGIPGSPGSRGDP
GIGVAGPPGPSGRPGDKGPPGSRGLPGLPGPQGPAGQDGAPGNPGERGPPGKPGPASLLS
PEDINLLVKDVCNDCPPGPPGLPGLPGFKGDKGLPGKPGREGTEGKKGDTGPQGLPGPPG
VAGPQGNQGERGAEGEVGQKGEQGHPGVPGFMGPPGNPGPPGADGNAGPAGPPGLQGPPG
KEGPPGPQGPSGIPGLQGEEGKQGRDGKPGPPGEPGKAGEPGLAGAEGARGPQGFKGHTG
DPGPPGLRGEPGTIGPPGREGSPGKDGDTGPVGPQGPRGPRGPPGSSGSPGAPGDPGRPG
APGQKGNKGENGSPGLPGFLGPRGPPGEAGEIGAPGKEGAPGKPGEPGSKGERGDPGTKG
DKGLPGGKGQPGDPGIPGHKGHTGLMGPQGQPGESGPPGPPGPPGQPGFPGLRGESPSID
TLRRLIQEELGKQLEAKLAYLVAQMPPAHMKSSQGRPGPPGPPGKDGLPGRTGPIGEPGR
PGQGGLEGPSGPMGPKGERGVKGDPGTPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGSPG
PQGETGPAGHPGPPGPPGPPGQCDPSQCAYFASLAARPSNVKGP
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcccagagggagtccttcagcctgccttctgtggatgctactgctgtgggga
ggggatagtggctgccaggcccagcgtgcaggctgcaaaagcgtgcagtatgacctggtc
ttcctcttggacacctcctccagtgtgggcaaggaggacttcgagaaggtccgccagtgg
gtggccaacctggtagacacctttgaggtgggccctgatcacacccgtgtgggggtcgtg
cgctacagtgaccggcccactacagcctttgaactgggccacttcagctcccgcgaggag
gtgaaggccgctgcccggcgcatcacctaccacgggggcaacacgaacacgggcgatgcg
ctgcgttacatcaccagccgcagcttctctgcccaggcaggtggccggcctgggaaccgt
gccttcaagcaggtggccatcctattgacggatggccgtagccaggacctggtgctggat
gctgcagcagctgcccatgcagcgggcattcgcatttttgcagttggtgtgggcgctgcc
ctgaaggaggagctggatgagatcgcttcagaacccaagtccgcgcatgtcttccatgtt
tccgacttcaacgccattgacaagatccgtggcaagctgaggcgtcggctttgtgaaaac
gtgctctgtcccagtgttcgggtagaaggagaccgctttaaacacactaatggaggatcc
aagaaatgcacaggttttgacctgatggatttgttcagtgtgaaggagatcctggggaag
agagaaaatggagcacagagttcctatgtacggatgggttccttccctgtggtgcagaga
actgaggatgtattcccccaaggtctgcccgatgagtacgcctttgtcacaaccttccgg
ttccggaaaacatctcggaaagaagactggtacatctggcaggtcatcgatcagtatggc
atcccacaggtttctatccggctggatggtgagaacaaggcagttgagtacaacgctgtg
ggtgccatgaaggatgcagtcagggtggtcttccgaggtccccgggttgatgacctcttt
gaccgtgactggcacaagatggctctaagcatccaggcccagaatgtatccctctacatt
gactgtgtgctggttcagacactgcccatcgaggagagggagaacatcgacatccagggc
aagactgtgattggcaagcgtctctacgacagtgtgcccattgactttgacctgcagcga
attgtgatctactgtgactcgaggcatgcagaactggagacttgctgtgatatcccgacg
ggtccgtgtcaggtgactgtggtgacagaggctccgcctgctcctccacagctgcccact
cctggtagcgaacagattgggttcttgaagaccatcaactgctcatgcccagctggagag
aagggtgaaaggggctttgctggccctgtgggactccctggtcagaagggagattcagga
cccattggactgacaggtgctccagggcccaagggagagaaaggagacactgggagagga
cccttctttcaaggagaaaagggtgagaagggatccatgggcccacctggaccacccgga
agagatggcaataaaggcatgagaggggaaccaggagagctgggagagccagggctgcct
ggagaggtgggcatgcgggggcctcagggacctcctggattgccaggacctgcagggcaa
gttggaactccaggtctccaaggagaacgaggtcaaaggggagctccaggagaaaagggg
gaacgaggcctggatggattccctgggaagcctggagagacgggagagcagggaagacca
ggacctcctggtgtggcaggaccccagggagagaagggagatgtggggcctccaggacct
cctggcgtgccaggctctgtggtgcagaaagagggcctgaagggagagcagggagcccct
ggaccaagaggtcaccaaggcctacctgggcctccaggagcaccgggtttgattggtcca
gaaggcagagagggaccccctgggcctcaaggtctccgagggaaaaaaggcgaagtgggt
ccaccaggaaccccaggagcactagggccacagggcccgcctggaccacccggtgttccc
gggctccctggacctggaggacccccgggtttacctggagagctgggcttccccggaaaa
cctgggccctctggtcacatggggccacctgggaaggatgggctggatggaccgcctggc
ctgcctggctccaagggagcaccaggggaccctggggagagtggagtgcctggaatgcct
ggacctcggggtgaagttggggagcggggccttgcaggtctacccggtgaaaagggggaa
gttggccttccaggttctccgggcttcccaggagtgcgtggagagaaaggagaccaggga
gaaaaaggtgaactgggacttcctgggctaaaaggtgcccaaggtgaaaagggtgaggct
ggtccagcagggtcccctggcttacctggaagtccatccatgttcacaccacacccgaga
atgccaggagagcaagggccaaaaggagaaaagggtgaccctggtgaccctggtgctctg
ggaccccagggtcatcctggagaattgggccctcgaggacccactggacctccgggtgcc
aagggacatgatggtgcacatggaactcctggagcagctggaaaccctggtgctccagga
cctgcaggacctcccggtctcagtggccctccaggaagtttggggtcccccggcatcaga
ggtgctcctgggaaagacggggagcgtggggagaagggaacagcaggggaggaaggcagc
cctgggccagctggtccacggggcgatcctggtgctcctggcctccctgggccacctgga
aaagggaaggatggggagccgggacttcgtggaccgcctggtttacctggtcccttggga
accaagggtgaccgaggaacacctgggatccctggctctcctggcagccgtggcgaccca
ggcatcggggttgctggtccacccggcccttcaggacgaccaggagacaaaggacccccg
ggatctcgaggtttacctggactccccggcccccagggaccagctggccaggatggtgca
ccaggaaatccaggagaaagagggcctcctggaaaaccaggccctgcttcactgctgtct
ccagaggacataaatctcttagtaaaggatgtgtgcaacgactgccctcctggtccccca
ggcctcccaggtcttccaggtttcaaaggggacaaagggctcccgggaaagccagggaga
gaagggacagaaggcaaaaagggagatactgggccccaaggcctcccagggcctccagga
gtagctggaccacagggaaaccaaggagagcgtggcgcagagggtgaggtgggacagaaa
ggcgaacagggtcaccctggagttccaggcttcatgggcccaccagggaatcctgggcca
ccaggagcggatggaaatgcaggccctgcaggaccaccaggacttcaagggcccccgggc
aaagaaggccctcctggtccccaaggtccatcaggcattccaggactccaaggagaagaa
ggcaaacagggcagagatggaaagcctggtccccctggagaaccgggcaaggcaggagag
ccaggcctagcaggagcagagggagccagaggtccacagggcttcaagggacacacaggt
gatcctggcccacctggtctgaggggagaacctgggactattggcccccctggaagggaa
ggatcaccaggaaaagatggtgacactggacctgtaggaccacagggtcccagaggacca
aggggcccaccgggtagcagtggatcacctggagccccaggagaccctggccgtccagga
gccccgggacagaagggaaacaaaggagaaaatggcagcccaggacttccgggttttcta
ggtccccgtgggcctccgggagaagcaggagagataggagctccaggcaaggagggtgct
cctgggaagcctggagagccgggatccaaaggagagaggggagaccctgggaccaaaggt
gacaaaggattaccaggcgggaagggccagcctggagaccctggaatcccaggccacaag
ggtcatactggcctgatgggtccccaaggacaaccaggggaaagtggcccccctgggcct
ccagggccacctggccagccaggatttccaggacttcggggcgagtctccatccattgac
accctgcggcgcctcattcaggaagagcttgggaagcagctagaagctaaacttgcctac
ctcgtggcccagatgcctcccgcacacatgaagtcctcccaaggcagacctgggccccca
ggaccccctggaaaagatgggcttccgggcaggacaggccccataggtgagccaggccgg
cctggccaagggggtctggaaggaccctctggacctatgggccccaaaggtgaaagagga
gtcaaaggtgaccctggcacacctggagttggcctccgaggagagatgggtccccctgga
ataccaggtcaacctggggaacccggctatgctaaagatggactcccaggaagccctggc
cctcaaggagagacaggaccagctggacatcctggtcccccaggccctcccggccctcct
ggccagtgtgacccctcccagtgtgcatacttcgccagtcttgctgcccggccaagtaat
gtgaagggcccatag
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