Panthera leo (lion): 122206575
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Entry
122206575 CDS
T10741
Symbol
TNRC6C
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
plez Panthera leo (lion)
Brite
Messenger RNA biogenesis [BR:
plez03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122206575 (TNRC6C)
Chromosome and associated proteins [BR:
plez03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122206575 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
UBA_HYPK
Motif
Other DBs
NCBI-GeneID:
122206575
NCBI-ProteinID:
XP_042771824
LinkDB
All DBs
Position
E1:57341998..57437923
Genome browser
AA seq
1727 aa
AA seq
DB search
MATGSAQGAFTGHTKKTNGSNGTNGVPVQSPSNQGALGAGGANGNGNAARVWGVAAGPGS
GPAHCSLGGGDGKMDSMIGDGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVAT
GNPSSICSPVSAIGQNAGNQNGNPPGTLGAWGSLLPPESTEPQTSASQNVSFSVQPQNLN
TDGPNNTNPMNSSPNPVNAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGSSVSQVGGSG
GEGLSGSVWGLSPGNPAAGSSSSGFGQGSGDTVNSALSAKQNGSSSAAAQKEGSGGNAWD
SGPPAGPGLLAWGRGGGNSSGVGHIHSGAWGHPTRSASNGVNGEWGKPPNQHSNGDGNGK
GSTGWDGPSVSGQNPAVQPGSEHVNSWAKAASSGTTASEGSSDSSGSHHEGGSGREGAEG
RRRDKGILDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAW
GCAAPQPSHSGAKSDGSIVSSTNTSAVSGWVSSPPAAAPASTGWGDGSNKAPNGPGVWGD
SISSTAVNNAAAAAAVAKSGHAWSGTGNQEDKSPTWGSPXKPKSQTWGDGQKSNPAWSAG
GGDWADSSSVLGHLGDGKKNGSGWDADSNRSGSGWNDATRSGTSGWGNGTNAKVNPGTNW
GESLKPGPQQNWAGKPQDSNVSNWGGAASVKQTGTGWIGGPVPVKQKDNSEATGWEEPSP
PSIRRKMEIDDGTSAWGDPSNYNNKTVNMWDRNNPGMQSSTTAAATTTTTTTSSSTDVVE
TPPSHQAGAQLSRSPLLGPVSSGWGEMPNVHSKAESSWGEPSSPSALVDNGTAAWGKPPS
SGSGWGDQPAEPPVTFGRAGAPTAAPALCKPASKSMQEGWGSGGDDMNLGASQWEDEEGG
MWNSAASQESASSCASWGNAPKKGLPKGMKTSGKQDEAWIMNRLIKQLTDMGFPREPAEE
ALRSNNMNLDQAMSALLEKKVDVDRRGLGVTDYNGGVTKALGCRPPVSKDSSGDRPTFLD
KDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQALGGIASGLGMQNLNSSRQIPSGNLGVF
GSSGAAQARTMQQPPQPPVQPLSSSQPSLRAQVPPFLSPQVQAQLLQFAAKNIGLNPALL
TSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRSVSGPVRQQEQQVARTITNLQQQI
QQHQRQLAQALLVKPPPPPPHLSLHPSAGKSAMDSFPPHPQAPGLPDLQTKEPQSSPGTF
APYPLAGLNPNMNVSSMDMTGGLSVKDPSQSQSRLPQWTHPNPMDNLPGAAPPLDQNPSK
HGAIPGGLSIGPPAKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSS
INWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPPSS
QSAALPSSSAWPLSASGYGRSFSSIAPAPSIAGKLSDIKSTWSSGPASHTQASLSHELWK
VPRNTTAPTRPPPGLTNPKPSSTWGASPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTP
QIDGSTLRTLCLQHGPLVTFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEF
AGEEEVNRFLAQGQAVPSTSGWQSGTGAGQARLGASGGSHGLVRSDTGHWSAPCLAGKGS
SDLLWGGVPQYSSSLWGPPSSDDGRVIGSPTPLNTLLPGDLLSGESI
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggctacggggagtgcccagggcgccttcaccggacacaccaagaagacgaacggcagt
aatggcaccaacggggtgcccgtccagagcccttctaaccagggtgccctgggagcaggg
ggcgccaacgggaacgggaacgcggcccgagtgtggggcgtagccgcgggccccggctcg
ggcccagctcactgctccctcggcggcggggatgggaaaatggacagcatgatcggagac
gggagaagccagaattgctggggtgcttccaactccaatgccggcattaatctcaacctg
aaccctaatgccaacccggccgcctggcccgtactcggacacgaaggaactgtggcgaca
ggcaacccttccagtatttgcagtccggtcagtgccataggtcaaaacgcgggcaaccag
aacgggaacccgccgggcactttaggtgcttggggaagcctgctgccgccggagagcaca
gaaccacaaacgtccgcttctcagaatgtgtctttcagcgtacaacctcagaaccttaac
actgatggaccaaataacactaaccccatgaactcttcgccaaaccctgtcaatgcaatg
cagacgaacggactgccaaactggggcatggccgtcggcatgggggccatcatcccaccc
cacctgcaaggccttcctggtgctaacggatcctcggtgtctcaagtcggagggagcggc
ggcgaaggactcagcggttccgtgtggggcctgtccccgggtaaccctgccgcgggaagc
agcagttctggcttcggtcagggcagtggagacactgtgaactcggcgttgagcgctaaa
cagaacggatccagcagtgcggcggcgcagaaggaaggaagtggcggtaacgcctgggac
tcgggccctcctgccggccccgggctcctcgcctggggacggggcggcggcaacagcagc
ggcgtcggtcacatccattcgggggcttggggccaccccacccgaagcgcctctaacggg
gtgaatggggagtgggggaagcccccaaaccagcattccaacggtgacggcaacgggaaa
ggatcgacagggtgggacggtccgagcgtcagcggccagaatcctgccgtgcagcccggc
agcgagcacgtgaactcttgggccaaagccgcgtcttctggaaccacggcaagcgaagga
agtagcgacagttccggcagtcaccacgaagggggctccgggagggaaggagcagaaggc
cggaggcgagataaagggatcctagaccaagggcatatccaattgccaaggaacgatctg
gacccgagagtcctgtctaatactggttggggacagactcccgtaaagcaaaacactgcc
tgggaatttgaagagtcccctaggtctgagaggaaaaatgacaacgggacagaggcctgg
ggctgtgcggctcctcagccttcacactcaggggcgaagagtgatgggtccatcgtgagc
agtacaaatacctctgcagtatccgggtgggtcagctcaccgcctgctgctgcgccggcg
agcacagggtggggggacggcagcaacaaagcgccaaatggcccgggggtctggggggac
tcgataagctctactgctgttaataatgctgctgctgctgctgctgtcgccaagagcggc
cacgcttggagtgggaccggaaaccaggaggacaagtcgcccacctgggggagccccnag
aagcccaaatctcaaacctggggagacggacaaaaatccaatccggcctggagcgctgga
gggggagactgggcggactcgtcttccgtcctcggacacttgggggacggaaaaaaaaac
ggctctggatgggatgccgacagtaatcggtcagggtctggttggaacgacgctaccagg
tctgggaccagtggctggggtaatggcacaaacgcaaaggtgaatccagggacaaactgg
ggagagtctttaaaacccggcccccaacagaactgggcgggcaaaccccaagacagcaat
gtgagtaactggggaggagccgcttccgttaagcagacgggaaccgggtggatcgggggt
ccggtccctgtcaaacagaaggacaacagtgaggccacgggctgggaggagccttctccg
ccatccatccgacgcaaaatggaaatcgatgatggtacctcagcttggggtgacccgagc
aactacaataataaaactgtaaacatgtgggatagaaacaacccgggcatgcagagcagt
accacggccgccgccaccaccaccaccaccaccacgagcagcagcacggacgtggtcgag
acgccgccgtcacaccaggccggcgcccagctgagtcgatcgccgctgctcggtccagtc
tcatccggctggggagagatgcctaacgtccattcgaaggctgagagctcttggggagag
ccgtcctccccctctgccctggttgacaacggcaccgcagcgtggggcaagccgcccagc
agtggcagcggatggggggaccagcccgcggagccgcccgtgaccttcgggagagccggc
gcccccactgccgccccggccctgtgcaaaccagcttcgaaatctatgcaagaaggctgg
ggcagtggtggggacgacatgaacctcggtgccagtcagtgggaagacgaagaagggggc
atgtggaacagtgctgcttcccaagaaagcgcgtcctcctgcgcctcctgggggaacgcc
cccaaaaaaggactcccaaagggcatgaaaacgtctggcaagcaggacgaggcctggatc
atgaaccggctgatcaaacaactcacggacatgggcttcccgagagaaccagctgaagag
gccttgaggagcaacaatatgaatcttgaccaggccatgagcgccctgctggaaaagaag
gtggacgtggacaggcgtggactgggagtgaccgactacaatggaggggtcaccaaagcc
cttggctgccgcccaccagtctccaaagactcttccggggaccgccccacctttcttgac
aaggacggcggcctggtggaagagcccacgacttcaccatttttgccttcaccaagcctg
aagctccccctttcaaacagtgcactccctaatcaggccctgggtgggattgcctcaggg
ctgggcatgcaaaacttgaattcttctagacagatcccgagtggcaatctgggcgtgttc
ggcagcagcggagcagcacaagccaggaccatgcaacagccgccgcagccgcccgtgcag
cctctgagctcctcccagcccagcctccgcgctcaagtgcctccgtttctatcccctcag
gttcaagcacagcttttgcagtttgcagcaaaaaacattggtctcaaccctgcactattg
acctcgccgatcaatcctcagcatatgacgatgttgaaccagctctatcagctgcagctg
gcataccaacgtttacaaatccagcagcagatgctacaggctcagcgcagcgtttccgga
cccgtgagacaacaggaacagcaagtcgcgcgcacaatcactaacctgcaacagcagatc
cagcagcaccagcgccagctggcccaggccctgctcgtgaagccgccgccgcccccgccg
cacctgtctctgcacccctctgcaggcaaatcggccatggacagcttcccccctcacccc
caggcccccggcctgcctgacctgcagaccaaagagccgcagtcttcacccggcaccttt
gctccctaccctctcgctggactgaacccaaacatgaatgtcagcagcatggacatgact
ggcggtttgtcagtgaaggacccgtctcagtcccagtcccgcctccctcagtggacacac
cccaacccgatggacaacctgcccggtgctgctcctcccctcgaccagaaccccagcaag
catggtgctatccccggaggcctgagcatcgggcctccggctaagtcctccattgacgac
tcctatggccggtacgatttaatccagaacagtgagtcaccagccagtcctccggtagct
gttccccacagctggtcacgtgccaaatctgacagtgataaaatctcgaatggctccagc
atcaactggcccccagaattccatcctggagtcccgtggaaaggacttcagaacatagac
cctgagaacgaccccgacgtcactcctggaagtgtccccaccgggcccaccatcaatacc
accatacaggacgtcaaccgctacctcctcaagagtggagggtcctccccaccgtcatct
cagagtgccgcgctgccttcctcgagtgcctggccgctcagtgcctccggctacggtcgc
tccttcagcagcatcgcaccggcgcctagcattgcaggtaaactgtcagacattaaatcg
acgtggtcctctggccctgcctcccacactcaagcctctctgtctcacgaactgtggaag
gtgcccagaaacactactgcacccacgaggccgcctccagggttaaccaatcccaagcct
tcctccacctggggagccagccccctcggctggaccagctcttactcctcgggttccgcg
tggagcaccgacacctcaggaaggacaagcagctggctcgttctccgcaacctcacgccc
cagatcgacggctctaccctacggacgctgtgtttgcagcacgggcctctcgtcacattc
cacctgaacctgacccaaggcaacgccgtggtccgctacagctccaaggaggaagccgcc
aaggcccagaagtccctgcacatgtgtgttctgggaaacaccaccatcctggccgagttt
gctggcgaagaagaggtaaatcgtttcctggcccaaggccaggcggtgccgtccacctcc
ggctggcagtcgggcaccggggccggccaggcgcggctgggcgcctcgggcggctcccac
ggcctggtgcggagcgacaccggccactggagcgccccgtgtctggccggcaaagggagc
agcgacctgctgtggggcggggtcccccagtactcaagcagcctctggggccctcccagc
agtgacgacggcagggtgatcgggagccccaccccgctgaacaccctgctgcccggcgac
cttctcagcggggaatccatctag
DBGET
integrated database retrieval system
