Panthera leo (lion): 122208316
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Entry
122208316 CDS
T10741
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
plez Panthera leo (lion)
Pathway
plez03030
DNA replication
plez03410
Base excision repair
plez03420
Nucleotide excision repair
plez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122208316 (LIG1)
03410 Base excision repair
122208316 (LIG1)
03420 Nucleotide excision repair
122208316 (LIG1)
03430 Mismatch repair
122208316 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plez03032
]
122208316 (LIG1)
03400 DNA repair and recombination proteins [BR:
plez03400
]
122208316 (LIG1)
Enzymes [BR:
plez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122208316 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
122208316 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122208316 (LIG1)
DNA replication proteins [BR:
plez03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122208316 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122208316 (LIG1)
DNA repair and recombination proteins [BR:
plez03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122208316 (LIG1)
NER (nucleotide excision repair)
Other NER factors
122208316 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
122208316 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
122208316
NCBI-ProteinID:
XP_042775171
LinkDB
All DBs
Position
E2:9485822..9531066
Genome browser
AA seq
911 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKETSSREIEPPPKVALKERNGEVPENDSPVKRPGRKAAR
VLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTFPEGSPPLSNTSPAGLSPTGIPKRR
TARKQLPKRPIQDILEEQNEDEDREAKRKKEEETPTESLTEPELAQKEEAEGDRPTTPAE
HLETSPAEPPTDSTSEPEVAGKQEAREGDQAKPPPRAPKMVSSFFAPRKPATKKEGKEEG
PGAPRKEEAKGPLDPPGYNPAKNNYHPVDDACWKPGQKVPYLAVARTFEKIEEVSARLRM
VETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLES
VKAEAAEKGDMGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIAGLAGSASTAKKIDVIK
GLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQDFPPAVVDAGKGRT
AEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHPT
RGVSEILKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKI
KLPSVTSFILDTEAVAWDREKKQIQPFQMLTTRKRKEVDAADIQVQVCLYAFDLIYLNGE
SLVCEPLSRRRQLLRENFVQTEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTLD
VDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESE
ELQAICKLGTGFSDEELEDHFHSLQALVLPTPRSYVRADGAVAPDHWLDPSAVWEVKCAD
LSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVASLFKKQSQIQNQQG
ADLDSDPEDFY
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccaagaaggagggcaaagcgaaaaagcca
gagaaagagacctccagcagagagatagagccacctccaaaggtggcgctgaaggaacgg
aacggagaggtgcctgagaacgattctccggtgaagaggccagggcggaaggcggcccgg
gtcctgggcagtgaaggggaggaggaggacgaagccctcacgccctccaaaggccagaag
ccggccccaggctctccacaggtctcccctcccagccctgtcacatttcccgagggcagc
cctcccctctccaacacctctcctgcgggcctctccccaacggggatcccgaagcggcgc
acagctcggaagcagcttcctaaacggccgattcaggatatcctggaagaacagaacgag
gatgaggacagagaggcaaagaggaagaaggaagaagagaccccaacagaaagcctcaca
gagcctgaattggcccaaaaggaggaagcagaaggggaccggcccacgacgcccgctgag
cacttagagacctccccagccgagcccccgacagacagcacctcagagcctgaggtggcc
ggaaagcaggaagcacgggagggggaccaggctaagcctccccccagagctcccaagatg
gtcagcagtttcttcgctccccggaagccggcgaccaagaaagaagggaaagaagaggga
cctggcgcccctagaaaggaggaggccaaaggacccctggacccccccggctacaatccg
gccaagaacaactaccatcccgttgacgacgcctgctggaagccgggccagaaggtccct
tacctggctgtggcccggacatttgagaagattgaggaggtttctgctcggctccggatg
gtggagacactgagcaacttgctgcgctccgtggtggccctgtcccccccagacctgctc
cccatcctctacctcagcctcaaccgcctcgggccgccccagcagggcctggagctcggc
gtcggggacggtgtcctcctcaaggcggtggcccaggccacggggcggcagctggagtcc
gtcaaggccgaggcggccgagaagggcgacatggggctggtggccgagaacagccgcagc
acccagagactcatgctgcccccacccgctctcacggccgccggcgtcttcgccaagttc
cgagacatcgccgggctcgccggcagcgcttccacagccaagaagatcgacgtcatcaaa
ggcctctttgtcgcctgccgacactcagaagcccgattcatcgccagagccctgagcgga
cggctacgcctcgggctggcagagcagtcggtgctggccgccctcgcccaggccgtgagc
cttacgccccccggccaagatttccccccggctgttgtggacgctgggaagggccggaca
gcggaggcccggaagacgtggctggaggaacagggcatgatcctgaagcagacgttctgc
gaggtgcccgacctggaccggatcatccctgtgctgctggagcacggcctggagcacctc
ccggagcactgcaggctgagcccaggggtccccctgaaaccgatgctggcacaccccacc
cgcggtgtcagcgagatcctgaaacgctttgaggaggcggctttcacctgcgagtacaaa
tacgacgggcagagggcacagatccatgtcctggaaggcggggaggtaaagatcttcagc
aggaatcaggaagacaataccggaaagtacccggacatcatcagccgcatccccaagatt
aaactgccgtcagtcacgtccttcatcctggacacggaagccgtggcctgggaccgggaa
aagaagcagatccagccgttccaaatgctcaccacccgcaaacgcaaggaggtggacgca
gcagacatccaggtccaggtttgtctgtatgccttcgacctcatctacctcaatggagag
tccctggtatgcgagcccctttcccggcgccgacagctgctccgggagaacttcgtgcag
acggagggcgagttcgtcttcgccacctctctggacaccaaggacacagaccagatcgcc
gagttcttggagcagtccgtgaaagactcctgcgaggggctgatggtgaagactctggac
gtcgacgccacctacgagatcgccaagagatcacacaactggctcaagctgaagaaggac
tacctcgatggcgtgggcgacaccctggacctcgtggtgatcggcgcctacctgggccgt
gggaagcgggccggccgctacgggggtttcctgctggcggcctacgacgaggagagtgag
gagctccaggccatatgcaagcttggaactggcttcagtgacgaggagctagaggaccat
ttccacagcctccaggccctggtgctgcccaccccacgctcctacgtccgggccgacggc
gccgtggcccccgatcactggctggaccccagcgccgtgtgggaggtgaaatgcgccgat
ctgtccctgtcccccatctaccccgctgcccggggcctggtggatagcgagaaggggatc
tccctccgtttcccccggtttattcgcgtccgcgaagacaagaagccggaggaggctacc
accagtgcccaggtggcctctctgtttaagaagcagagtcagattcagaaccagcagggc
gcggacttagactccgacccggaagatttctactag
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