Panthera leo (lion): 122213890
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Entry
122213890 CDS
T10741
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
plez Panthera leo (lion)
Pathway
plez03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plez00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122213890 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plez03019
]
122213890 (XAB2)
03041 Spliceosome [BR:
plez03041
]
122213890 (XAB2)
Messenger RNA biogenesis [BR:
plez03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122213890 (XAB2)
Spliceosome [BR:
plez03041
]
Complex B
Other components
Prp19-related factors
122213890 (XAB2)
Complex C
122213890 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
122213890
NCBI-ProteinID:
XP_042784198
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All DBs
Position
A2:6087104..6101457
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AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRITHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGGDEDEDEMDLEPNEVRLE
QQRVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtctttcccggccggagcggccggaccttgttttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaaatgctggctccgc
tacattgagttcaagcagggtgccccgaagccgaggctcaatcagctgtacgagcgggcc
ctgaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcgcgccgggca
caggtgaagcatcgctgcgtgaccgacccggcctacgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccacggctgtggctagactattgccagttcctg
atggaccagggccgaatcacacacacccgccgcactttcgaccgcgctctccgggcactg
cccatcacgcagcactctcgcatctggcccctgtacctgcgcttcctgcgctcacaccca
ctacctgagacggccgtgcggggctaccggcgcttcctcaagctgagccccgagagtgca
gaggagtacatcgagtacctcaagtccagtgaccggctggatgaagctgcgcagcgcctg
gccaccgtggtgaacgacgagcgctttgtgtccaaggctggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccagacaaggtgcagtcactcaatgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggctgactactacatccgcagcggccacttcgagaaggctcgagacgtgtacgag
gaggccatccggactgtgatgaccgtgcgcgacttcacccaggtgttcgacagctacgcg
cagtttgaggagagcatgatcgcagccaagatggagacggcctcagaactggggcgggag
gaggaagatgacgtggacctggagctgcgcctggcccgcttcgagcagctcatcggccgg
cggcccctgctcctcaacagtgtcttgctgcgccagaacccacaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgcccccgggagatcatcaacacgtacacggag
gccgtgcagacggtggaccctttcaaggctacaggcaagccccacacactgtgggttgcg
tttgccaagttttacgaggacaacgggcagctggacgacgcccgcatcatcctggagaag
gccaccaaggtgagcttcaagcaggtggacgacctggccagcgtgtggtgtgagtgtggc
gagctggagctccggcacgagaactacgaccaggctttgcggctgctgcggaaggccacc
gcgctgcctgcccgccgggccgagtacttcgacggctcggagcccgtgcagaaccgcgtg
tacaagtccctgaaggtgtggtcgatgctcgccgacctggaggagagcctgggcaccttc
cagtccaccaaggccgtctacgaccgcatcctggatctgcgtatcgccacgccccagatt
gtcatcaactacgccatgttcttggaggagcacaagtacttcgaggagagcttcaaggcg
tacgagcgtggcatctcgctgttcaagtggcccaacgtgtctgacatctggagcacctac
ctgaccaaattcattgcccgctacgggggccgcaagctggagcgggcgcgggacctcttc
gaacaggcgctggacggctgccctcccaaatacgcgaagacactgtacctgctgtacgcc
cagctggaggaagagtggggcctggcccggcacgccatggcagtgtacgagcgcgccacc
cgggccgtggagcccgcccagcagtacgacatgttcaacatctacatcaagcgtgcggcc
gagatctacggggtcacccacacccgcggcatctaccagaaggccatcgaggtgctgtcg
gacgaacacgcccgggagatgtgcctgcggttcgcggacatggagtgcaagctcggcgag
atcgaccgggcgcgggccatctacagcttctgctcccagatctgtgacccccggaccacc
ggggctttctggcagacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacgtacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcaccgtgtccgacctcgcc
cccgggcagagcggcatggacgacatgaagctgctagagcagcgggcagagcagctggcg
gccgaggccgagcgggaccagcccccgcgggcccagagcaagatcctgtttgtgaggagc
gacgcatcccgggaggagctggccgagctggcccagcaagccaacccggaggagatcgag
ctagggggggacgaggacgaggatgagatggatctggaacccaacgaggtgcggttggag
cagcagagggtgccggctgccgtgttcgggagcctgaaggaggactga
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