Panthera leo (lion): 122225047
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Entry
122225047 CDS
T10741
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plez Panthera leo (lion)
Brite
KEGG Orthology (KO) [BR:
plez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plez03016
]
122225047 (RTCB)
Enzymes [BR:
plez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122225047 (RTCB)
Transfer RNA biogenesis [BR:
plez03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122225047 (RTCB)
Prokaryotic type
tRNA splicing ligases
122225047 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
122225047
NCBI-ProteinID:
XP_042803561
UniProt:
A0A8C8YAG6
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All DBs
Position
B4:complement(126702518..126725017)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaagaaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctatcgggcttcctgatgtccactcaggttatgggtttgctattgggaacatggca
gccttcgatatgaatgaccccgaagcagtggtatccccaggtggtgtcggatttgacatc
aactgcggtgtccgcttgctcagaaccaatttagatgaaagcgatgtccagccagtgaag
gagcagcttgcccaggctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atccccatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agggaaggctacgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgttg
caggctgatcccaataaggtctccgcaagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggaaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagc
ggaagcagaggcttgggccaccaagtagccacagatgcactggttgctatggaaaaagcc
atgaagagagacaagatcatagtcaacgaccggcagttggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaagggaatggcagctgctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaactcct
gatgacttggacctacacgtgatctatgatgtttctcacaatattgccaaagtcgaacag
cacgtggtggatggaaaggaacggacactgttggtgcacaggaagggatccacccgagct
tttcctcctcaccatccccttattgctgttgattaccaactcactggacaaccagtgctc
attggtggcaccatgggcacctgtagttacgttcttactggcactgaacagggtatgact
gagaccttcggaacaacttgtcacggagcgggccgtgcattatcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttggacaaactggcagatatgggaatcgcaatccgc
gttgcctcgcccaaactggttatggaagaggctcctgagtcctacaagaatgtgaccgac
gtggtaaacacctgccatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gccgtgatcaaaggatag
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