Pantoea ananatis LMG 5342: PANA5342_1632
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Entry
PANA5342_1632 CDS
T01728
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
plf
Pantoea ananatis LMG 5342
Pathway
plf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PANA5342_1632 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plf03400
]
PANA5342_1632 (sbcB)
Enzymes [BR:
plf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PANA5342_1632 (sbcB)
DNA repair and recombination proteins [BR:
plf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PANA5342_1632 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PANA5342_1632 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PANA5342_1632 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
CCF09025
LinkDB
All DBs
Position
complement(1728452..1729873)
Genome browser
AA seq
473 aa
AA seq
DB search
MPASEFTFLFHDYETFGTSPSRDRPAQFAGLRTDSNFNPVGEPEVFYCRPPDDYLPQPEA
VMITGITPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDP
YGWSWQNGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDA
MSDVYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNT
SWVVPLAWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHI
NKCPVLAPANTLRPEDAGRLGIDRKSCLDNLATLRQHPEIREKLVAIFADAEPFTPSDDV
DTQLYDGFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDAE
QQRWLQHRREVLNPDKVQSFLMELESLASLHESDQEKLAQLKALYLYAQELVS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgcctctgaattcactttcttattccatgattacgaaaccttcggcaccagtccg
tcacgggatcgtccggcgcagtttgccgggttacgtaccgacagcaactttaatccggtt
ggcgagccagaggtgttttactgccgtccgccggacgactatctgccccagcctgaagcg
gtaatgattaccggtattacgccgcaaattgccgcctcgcggggcgtcagcgaggccgag
tttgccgcccgcattcatgccctgttcaccgccgaacaaacctgcgtggtgggctacaac
aacgtgcgcttcgacgatgaagtgacacgcaatattttctaccgcaacttctacgatccc
tatggctggagctggcaaaacggtaactctcgctgggatttgctggacgtgatgcgtgcc
tgctatgcgctgcggcccgaaggcatcaactggcccgaaaatgaagacggttttcccagc
ttccggctggagcacctgaccaaagccaacggcgtagcccatgaaaacgcccacgatgcg
atgtcggatgtctatgccacactcgcaatggcgaaactggtgaaagagaaacagcctaag
ctgttcgagtttttgtttacgcatcgcaacaaaaacaaactcatgaccctgatcgatatt
ccacagatgaagccgctggtgcacgtttccggcatgtttggcgcagcacgcggcaatacc
agttgggtggtgccgcttgcctggcatccggataaccgcaatgcgctaatcgtggtcgac
ctggccggcgatatgacgccgcttttaacactggatgccgacagcctgcgcgaacgtctc
tacacgcgcaaaagcgagttgggcgatcaatcagccattcccgttaagctggtgcacatc
aataagtgcccggtgctggctccggcgaataccctgcggcctgaagatgccgggcggttg
ggcatcgatcgcaagtcttgtctggataatctggcgacgctgcgtcagcatcctgaaata
cgtgaaaagctggtggcgatatttgccgatgcggaaccctttacgccgtcggatgatgtg
gatacccagctctacgatggcttctttagcgatgccgatcgggcgggcatgaacattatt
cgccagacggcgccggctaacctgcccgcgctggatctgacgtttgacagtccgcgcgtg
gcgaagctgctgtttcgttatcgggcgcggaacttccccggcaccctggatgatgctgaa
caacagcgctggctgcagcaccgtcgcgaagtactgaatccggataaggtgcagtcgttt
ttgatggagctggaatcgctggccagcctgcatgaaagcgatcaggaaaagctggcccag
ttaaaagcgctgtatctgtatgcgcaggaactggtgtcctga
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