Pantoea ananatis LMG 5342: PANA5342_2039
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Entry
PANA5342_2039 CDS
T01728
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
plf
Pantoea ananatis LMG 5342
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plf03016
]
PANA5342_2039 (rnd)
Enzymes [BR:
plf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PANA5342_2039 (rnd)
Transfer RNA biogenesis [BR:
plf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PANA5342_2039 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF4019
Motif
Other DBs
NCBI-ProteinID:
CCF09432
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All DBs
Position
2141712..2142833
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AA seq
373 aa
AA seq
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MNYSLIDNDDRLAEVCNKARQHTAVALDTEFVRTRTYYPQLGLIQLFDGEQLVLIDPLPV
RDWSPFIELLTDTRVTKFLHAGGEDLEVFLHRFAVLPQPMIDTQILAAFSGQPLSWGFAS
MVAHFTQVELDKSEARTDWLARPLTERQCQYAAADVHYLLPIAHQLMQQVEQAGNMAAAL
SECENLCQRRLDSLAPEDAWRDITNAWQLRPRQLAALQRLAAWRLKVAREKDMAVNFVVR
EENLWKVARFMPGSQGELDHLGLSGHEIRLHGRAMLAQVADAAGLAESELPPPLSNLVDH
VNYKRAFKAIKALVQQVSEQSGFSQELLASRRQINQVLSQHWGLKPQNREPELLTGWRGD
VLKPGIMTILAEM
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtgaactattccctgatcgataacgatgatcgcctggccgaggtgtgcaacaaagcacgc
cagcatacggccgtcgccctggatacggaatttgtccgtacccgtacctactatccacag
ctgggactgattcagctgtttgatggcgaacagctggtgttgatcgatccgttacctgtc
cgtgactggtcaccgtttatcgaactgttaacggatacccgcgtcacgaaatttttgcac
gcgggcggcgaagatttggaagtcttcctgcaccgttttgctgtactgccacagccgatg
attgatacacagattctggcggcctttagcggtcaaccgctttcctggggatttgcctcc
atggtggcgcactttacccaggtcgaattagataagagtgaggcgcgcacggactggctg
gcgcgtccgctgacggaacggcagtgccagtatgccgctgccgacgtgcattacctgttg
ccgattgctcatcaactcatgcaacaggttgagcaggcagggaacatggcggcggcgctg
agcgaatgtgaaaacctgtgccagcgtcggctggatagcttagcgccggaagatgcctgg
cgcgatatcaccaatgcctggcagctgcgtccgcgccagctggcggcgctgcaacgtctg
gcggcctggcggctcaaggttgcccgagaaaaagacatggcagtgaattttgtggtgcgg
gaagagaatctgtggaaagtcgcccgtttcatgccgggctcgcagggtgagttagatcac
ctgggcttatctggccatgagattcgtcttcacggcagggcgatgctggcgcaggtcgca
gacgcagccggactggctgaaagcgagctgccgccgccgttaagcaatctggtcgatcat
gtgaactataagcgggcgtttaaagcgatcaaagcactggtgcagcaggtaagtgagcag
agcgggtttagtcaggagctgctggcatcgcgccgacagatcaatcaggtactgagtcag
cactgggggctgaagccacaaaaccgcgaacctgaactgttaacaggctggcgaggcgac
gtgctgaaacccggcattatgaccatccttgccgagatgtaa
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