Pantoea ananatis LMG 5342: PANA5342_2171
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Entry
PANA5342_2171 CDS
T01728
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plf
Pantoea ananatis LMG 5342
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plf03019
]
PANA5342_2171 (hrpA)
Enzymes [BR:
plf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PANA5342_2171 (hrpA)
Messenger RNA biogenesis [BR:
plf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PANA5342_2171 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
HA2_N
nSTAND3
PhoH
NACHT
ResIII
AAA_30
SLFN-g3_helicase
AAA_25
AAA_23
Motif
Other DBs
NCBI-ProteinID:
CCF09564
LinkDB
All DBs
Position
2275184..2279083
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSPVSSPLTPLWSRLDALMLRDRQRLQRRLHGAKKIKNPDAQQSIAAELEQDIIVAECR
VAQRVAATPRITFPENLPVSQKQQVIAEAIREHQVVIVAGETGSGKTTQLPKICLTLGRG
ITGLIGHTQPRRLAARTVANRIADELETSLGGCVGYKVRFNDQVSETTQIKLMTDGILLA
EIQQDRMLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FNNAPVIEVSGRTYPVEVRYRPVVEEAEDVDRDQLQAIFDAVDELGREGRGDILIFMSGE
REIRDTADALMKRDLPHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYAEDDFLSR
PAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRHIQDGVRLLEELGALTLNDD
GHYSLTGSGRQLAQLPVDPRLARMVLAAQQYGCVREVMIIAAGLSIQDPRERPADKKQAS
DEKHRRFADKESDFVAFVNLWNYLGEQQKALSGNLFRRQCKTDYLNYLRVREWQDIYTQL
RQVVRELGIPVNSEPAEYREIHCALLTGLLSHIGQKDADKQEFTGARNARFAIFPGSGLF
KKPPKWTMVAELVETSRLWGRMAARIDPEWIEPLAQHLIKRSYSEPHWEKSQGAVMASEK
VTLYGLPIVAARKVNYGTIDPTLSRELFIRHALVEGDWQTRHAFFRANQKLRSEVEDLEH
KSRRRDILVDDETLFAFYDRRVGKDVVSARHFDTWWKQASKTNAELLNFDKQMLIKEGAD
KVSQLDYPNVWHQGNLKLKLSYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGVRRE
LIIALIKSLPKPLRRNLVPAPNYAEAFLGRVTAMEMPLLDALSREFRRMTGVTLERDNWQ
WEQVPDHLKMTFRVVDEHNRKLQEGKDLAGLKRLLKGKVQETLSNVADDGLEQSGLHLWS
FGDLPRSYQQKRGSYEVKAWPALVDEKDSVGIRLFDSEHEQQKMMWRGQRRLLLLNIPSP
VKYLHEKLPNKAKLGLYFNPYGKVMELIDDCIACGVDKLIAEAGGPAWEQTQFEALREKV
RAELNDTVVEIAKQVEQILTAVFSINKRLKGRVDMTLALALADIKAQMNGLVYRGFVTQN
GWQHLADTLRYLHGIERRLEKLPVDPHSDRARMLKVQAVEQARQAWWNKLPPQRQDDADV
QHIRWMIEELRISQFAQQLGTPYPISDKRILQAMEQIAG
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctccggtttcatccccattaacgccgctctggtcgcggcttgatgcgttaatg
ctgcgtgaccgtcaacgcttgcagcgtcggttacatggcgccaaaaaaatcaaaaatccc
gacgctcagcaaagcatcgccgccgagcttgagcaggatatcattgttgcagagtgccgc
gttgcacaacgtgttgcggcgacgccgcgcatcacgtttccggaaaatctgccagtcagc
cagaagcagcaggtcatcgcagaggcgattcgtgaacaccaggtggttatcgtcgcgggt
gaaaccggatcgggcaaaaccacccagttgcccaaaatttgcctgacgctgggtcgcggt
attaccggcttaattggtcacactcagccgcgtcggctggcggcacgtaccgttgccaac
cgcatcgccgacgagctggaaacttcgctcggtggctgtgtgggttacaaagtgcggttt
aacgatcaggtcagcgaaacgacccagattaaactcatgacagacggaattctgctggcg
gaaatccagcaggaccgcatgctaatgcagtatgacaccatcatcattgatgaggctcat
gaacgcagcctgaatatcgacttcctgctgggctacctgcgggagttactgccgcgtcgt
cccgatctgaaagtgattattacgtcagcaaccatcgatccccagcgcttctctcgtcat
ttcaacaacgcgccggtgattgaggtgtcgggccgcacctatccggtagaagtgcgctac
cgtccggtggtggaagaggcggaggatgttgaccgcgatcaactgcaggccatcttcgac
gcggtcgatgagctggggcgggaaggccggggcgacatcctgatttttatgagcggtgag
cgcgaaattcgcgataccgccgacgcgctgatgaagcgcgatctgccccataccgaagtg
ttgccgctctatgcccgtctgtctaacagcgagcagaaccgggtatttcagtcgcacagc
gggcggcgtatcgtgctggcaaccaacgtcgccgaaacgtcgctgaccgtaccgggcatc
aaatacgttatcgatcccggcacggcgcgtatcagccgctacagctatcgcacgaaagtg
cagcgcctgccgatagagccgatttcgcaggcctccgcgaatcagcgtaaaggacgttgc
gggcgcgtgtcggaagggatctgcatacggctctatgccgaagacgatttcctgagccgt
ccggcctttaccgatcctgaaatcctgcgcaccaatctggcctcggttattctgcagatg
accgcgctggggctgggcgatatcgcggccttcccgttcgtggaagcaccggataaacgc
cacattcaggacggcgtaaggctcctggaggagctgggggcattaaccctcaatgacgac
ggacattactcactcaccggctccggccgccagctggcgcagttgcctgtcgatccgcgc
ctggcgcgcatggtgctggcagcacagcagtatggctgcgtgcgggaagtgatgatcatc
gctgccggcttatcgattcaggacccgcgcgaacgtcccgccgacaaaaagcaggcctcg
gatgaaaaacaccggcgctttgcggataaagagtcagattttgtggcgtttgtgaacctg
tggaactacctgggcgaacagcagaaagcgctgtccggtaacctgttccgccgtcagtgt
aaaacagactatttaaactatctgcgcgtgcgcgaatggcaggatatctatacccagctc
cgtcaggtagtgcgcgaactgggcattcccgttaacagcgagccagcggagtacagagag
attcactgtgccttgctgaccggcttactgtcacatatcggtcagaaagacgccgataaa
caagagtttaccggcgcacgcaacgcccgttttgctatcttccccggctctggactgttt
aaaaagccgcctaaatggacaatggtcgctgaactggtggaaaccagccggctgtggggc
cgcatggcggcgcgcatcgatcccgagtggattgagccgctggcgcagcacctgatcaaa
cgcagctacagcgaacctcactgggagaaatcgcagggcgcggtgatggccagtgagaaa
gtgactctttacggtttgccgattgtggctgcgcgcaaagtgaattacggcaccatcgat
cccacgctcagccgcgagctgtttattcgccatgcgctggttgagggcgactggcagacg
cgtcatgcgtttttccgcgctaaccagaaactgcgcagcgaagtcgaagatctggaacat
aaatcccgtcgccgcgatattctcgtggatgatgaaacgctgtttgctttctacgatcgg
cgcgtgggcaaggatgtcgtttcagcccgccattttgacacgtggtggaagcaggccagc
aaaaccaatgctgaactgctgaactttgataagcagatgctgatcaaagagggcgcggat
aaggtcagccagctcgactatcccaacgtctggcatcagggaaaccttaaactcaagctg
agttatcagtttgaacccggtgcggatgccgatggcgtcacggtccatatacctttaccg
ctgcttaaccaggtggaggaagcgggttttgaatggcagatccccggcgtgcggcgcgag
ctgatcatcgccctcatcaaatcgttaccaaagccactgcgccgcaacctggtgcctgca
cccaactatgctgaggcgtttctgggccgtgttaccgccatggagatgccattgctggat
gcgctgtcgcgggaattccgccgcatgaccggcgtgacgctggagcgagacaactggcag
tgggaacaggtgcccgatcatctgaaaatgacgtttcgggttgtcgatgagcacaaccgc
aaacttcaggaaggcaaagatcttgctgggctgaaacgcctgttaaaaggaaaggtgcag
gaaacgctctctaacgtggcggacgatggcctggagcagagcggtttgcacctctggagc
tttggcgatttaccgcgcagttaccagcaaaaacgcggcagctatgaggtaaaagcctgg
cctgctctggttgacgagaaggacagcgtgggcatccgcttgtttgacagcgagcatgag
cagcagaaaatgatgtggcgcggtcagcgtcgcctgttgttgctgaatattccgtccccc
gtgaagtatctgcatgaaaagttgccgaacaaagccaagctggggctgtattttaaccct
tacggcaaggtcatggagctgattgatgactgcattgcctgcggcgttgacaagttaatc
gcagaagccggtggcccggcatgggagcaaacgcagtttgaagcgctaagggaaaaagtg
cgcgccgaactcaatgataccgtggtagagatcgcaaagcaggttgagcagattctgaca
gcggtattttcgattaacaaacgtctgaaagggcgggtagatatgacgctggcgctggcg
ctggcggatatcaaagcgcagatgaacggcctggtttaccggggttttgtcacccagaat
ggctggcagcatctggcagatacgctgcgttatctgcacggcattgagcgacggctggag
aagttgccggtcgatcctcatagcgatcgcgcccgaatgctcaaagtgcaggccgtcgag
caagcgaggcaggcatggtggaataaattgccgccgcagcgtcaggatgacgcggacgtg
cagcatatccgctggatgattgaagagctacgaatcagccagtttgcgcaacagctggga
acgccttatccgatttcggataaacgcatcctgcaggcgatggagcaaatcgcaggctag
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