Pantoea ananatis LMG 5342: PANA5342_3056
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Entry
PANA5342_3056 CDS
T01728
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plf
Pantoea ananatis LMG 5342
Pathway
plf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PANA5342_3056 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plf03019
]
PANA5342_3056 (rhlE)
Enzymes [BR:
plf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PANA5342_3056 (rhlE)
Messenger RNA biogenesis [BR:
plf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PANA5342_3056 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HI1480
DUF6256
Motif
Other DBs
NCBI-ProteinID:
CCF10449
LinkDB
All DBs
Position
complement(3196228..3197577)
Genome browser
AA seq
449 aa
AA seq
DB search
MSFDSLGLSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLL
QKLSANTGAVRGRRPVRALILTPTRELAAQVGENVVEYSKFLPLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLI
GEGNWQQVLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDI
ERLLKREIPRLAVPGYEPDPSIKAEPIVNGRQSQQPRGRGRSQGGQGAGAARPQGDKRSQ
PRRQGPAAGPSDKPAARPRRPAPKRSGNA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactctctcggcctgagtgccgatattttgcgtgcggttgctgagcaaggc
tacagcgaaccgactcctatccagcgccaggcgattcctgtggtgctgtccggccgcgat
ctgctggcaagtgcgcagaccggcaccggcaaaacggccggattcacgctgcctttacta
cagaagctgtcggcgaataccggcgcagtacgtggacgtcgtccggtgcgtgcgctgatc
ctcacgcctacccgtgaactggccgctcaggtcggggaaaacgttgttgaatacagtaag
tttttaccgcttcgttcgctggtggtgtttggtggtgtcagcattaacccgcagatgatg
aagctgcgcggcggggtcgatattctggtggcaacaccgggccgtttactggacctggtc
catcagaacgcggttgacctctctcaggtggaagtgctggttctggatgaggccgatcgt
atgctcgatatgggctttatccacgatattcgccgtgtgctggcaaaactgcctgccaaa
cgtcagaacctgctgttctctgccaccttctcggacgagattaaaaccttggcagaaaaa
ctgctgcataacccggagcaggtggaagtggcacgccgcaacaccgcttcggagcaggtt
tctcaacaggtgcattttgttgataagaaacgcaaacgggaactgctgtcgcagctgatc
ggcgaaggtaactggcagcaggtgctggtgtttacccgaaccaagcatggggctaaccac
cttgcagaacagttgggtaaagacggtattaccgctgcggcgattcacggcaataagagt
cagggtgcacgtacgcgcgcactggctgattttaaatccggcgcaattcgcgtgctggtg
gccaccgatatcgcggcccgtggcctggatattgaagaactcccacacgtcgtaaactat
gagctgccaaacgtagcggaagactatgtgcatcgtattggtcgtaccggccgtgcggcg
gcaaccggcgtcgcactgtcactggtgtgcgtggatgaacacaaactgctgcgcgatatt
gaacgtctgcttaagcgtgaaattccgcgtctggccgtaccgggctatgagccggatcca
agcatcaaagcggaacctatcgtgaatggtcgtcagtcacagcagccacgcggccgtggt
cgcagccagggcggacagggtgcaggcgctgcgcgtccgcaaggggacaagcgttcacag
ccccgtcgtcagggaccggcagcgggcccgtctgacaagccagccgcgcgtccacgtcgc
ccagcgcctaagcgtagcggaaacgcctga
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