Pantoea ananatis LMG 5342: PANA5342_3069
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Entry
PANA5342_3069 CDS
T01728
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
plf
Pantoea ananatis LMG 5342
Pathway
plf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PANA5342_3069 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plf03400
]
PANA5342_3069 (uvrB)
DNA repair and recombination proteins [BR:
plf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PANA5342_3069 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PANA5342_3069 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
SBDS_domain_II
UB2H
DUF87
AAA_22
HH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
CCF10462
LinkDB
All DBs
Position
complement(3207426..3209447)
Genome browser
AA seq
673 aa
AA seq
DB search
MSKDFKLNSAFKPSGDQPEAIRRLEAGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEFFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMIIDQRSILRRLSELQ
YTRNDQAFQRGSFRVRGEVIDIFPAESDDMALRVELFDEEVERLSLFDPLTGQVESVVPR
FTIYPKTHYVTPRERILQAMEDIKVELADRRKTLLENNKLLEEQRITQRTQFDLEMMGEL
GYCSGIENYSRYLSGRGPGEAPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGKYELEKSGDEVIDQVVRPTGLLD
PILEVRPVATQVDDLLSEIRQRVTINERVLVTVLTKRMAEDLTEYLEEHGEKVRYLHSDI
DTVERMEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNINGKAILYGDKITPSMARAIEETERRREKQQRHNEENGIVPQGLNKKITDILELG
NNVVKTRGKAKPAKRNAAEADADYLALSPQALQKKIHELEGQMQQHAQNLEFEQAAGLRD
QLQELRTLFIAVS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagattttaaactgaactccgctttcaagccttccggcgatcagccagaggcg
atccgtcgtcttgaagccggactggaagatggcctggcgcaccagacgctattaggcgtt
accggatcgggtaaaacctttaccgtggctaacgtgatcgccgatcttaaccggcccacc
atggtgctggcaccgaacaaaacgctggcggcccagctgtatggtgagatgaaggagttt
ttcccggacaacgcggtggagttttttgtctcctattacgattactaccagcctgaagcc
tatgtcccaagctctgacacctttatcgaaaaagacgcctcggttaacgaacacatcgag
cagatgcgtctttccgccactaaagcattactggagcggcgtgatgttatcgtcgttgcc
tcggtgtcggccatttacggtctgggcgatcccgatctttatctgaaaatgatgctgcac
ctgacgcgcggtatgatcatcgaccagcgcagcattctgcgtcgcttgtcagagctgcag
tacacgcgcaacgaccaggcgtttcagcgcggcagcttccgggtgcgtggcgaggtcatc
gatatttttccggcagagtccgatgatatggcactgcgggtggagttatttgacgaagag
gtcgagcgcctgtccctgtttgatccgctcaccgggcaggttgaatcggttgtaccgcgt
tttaccatctatccgaaaacgcactacgttacgccgcgtgagcgcattctgcaggccatg
gaagacatcaaggttgaactggccgaccggcgtaaaaccctgctggaaaacaacaaactg
ctggaagagcagcgcatcactcagcgcacccagtttgatctggagatgatgggcgagctg
ggctactgctccggcatcgaaaactactcgcgttacctgtcaggccgtgggccgggagag
gcgccgcctacgctgtttgactatctccccgcagatggcctgctggtggtggatgagtcc
cacgtcacgattccccaaattggcggcatgtaccgtggcgaccgtgcacgtaaagagacg
ttggtagagtacggtttccgactgccttcggcgcttgataaccgtccgatgaagttcgaa
gagtttgaagcgctggcccctcagacgatctatgtgtcggcaacgccgggcaaatatgag
ctggagaaatccggcgacgaggtcatcgatcaggtggtgcgtccaaccggcctgctggat
ccgattcttgaggtccgccccgtggcgacgcaggttgatgatttactgtctgagatccgc
cagcgcgttacgatcaacgagcgcgtcctggtgaccgtcctgactaaacgcatggcggaa
gatctgacagagtaccttgaagagcatggtgaaaaggtgcgctatctgcactcggatatc
gacacggtggaaagaatggaaatcattcgtgacctgcgtctgggcaaatttgacgtactg
gttgggatcaacctgttgcgagaagggctggacatgcctgaggtatcgctggtggccatt
ctggatgcggacaaagagggcttcctgcgttcggagcgttcgctgattcagaccattggt
cgtgcggcacgtaatattaacggtaaagcgattctgtatggcgacaagatcacgccttca
atggccagagcgattgaagaaacggaacgccgccgtgagaagcagcagcggcataacgaa
gaaaacggcatcgtgcctcagggcctgaacaagaaaatcaccgatattctggaactgggc
aataacgtggtgaaaacgcgtggtaaagccaagcccgctaagcgcaatgccgctgaggca
gacgccgattacctggcgttgtccccccaggcgttgcagaaaaagatccacgagctggaa
gggcagatgcagcaacatgcgcaaaacctggagttcgaacaggcggcgggcctgcgcgat
cagctgcaggaattgcgcacattgtttattgcggtgtcctga
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