Pantoea ananatis LMG 5342: PANA5342_3300
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Entry
PANA5342_3300 CDS
T01728
Symbol
hupB
Name
(GenBank) histone family protein DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
plf
Pantoea ananatis LMG 5342
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plf03032
]
PANA5342_3300 (hupB)
03036 Chromosome and associated proteins [BR:
plf03036
]
PANA5342_3300 (hupB)
03400 DNA repair and recombination proteins [BR:
plf03400
]
PANA5342_3300 (hupB)
DNA replication proteins [BR:
plf03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PANA5342_3300 (hupB)
Chromosome and associated proteins [BR:
plf03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PANA5342_3300 (hupB)
DNA repair and recombination proteins [BR:
plf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PANA5342_3300 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_bac_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
CCF10693
LinkDB
All DBs
Position
complement(3444953..3445234)
Genome browser
AA seq
93 aa
AA seq
DB search
MNRVNKSQLIDKIAADADISKAAAGRVLDAFMGSVSDALKGGDEVALVGFGTFSVRERAA
RTGRNPQTGKEITIPAGKVPGFRAGKALKDAVN
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgaatagagtgaataagtcacaactgatcgataaaattgctgccgatgccgatatttct
aaagcagcagcaggacgtgtgttagatgcatttatgggctctgtttctgatgcgctgaaa
ggcggagatgaagtggcgctggtgggattcggcactttctcagtacgtgagcgcgcagcg
cgcacaggccgtaacccacaaaccggtaaagagatcactatcccggcaggtaaagtaccg
ggtttccgtgcaggtaaagcactgaaagacgctgtcaactaa
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