Pantoea ananatis LMG 5342: PANA5342_3500
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Entry
PANA5342_3500 CDS
T01728
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
plf
Pantoea ananatis LMG 5342
Pathway
plf03030
DNA replication
plf03430
Mismatch repair
plf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PANA5342_3500 (dnaE)
03430 Mismatch repair
PANA5342_3500 (dnaE)
03440 Homologous recombination
PANA5342_3500 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plf03032
]
PANA5342_3500 (dnaE)
03400 DNA repair and recombination proteins [BR:
plf03400
]
PANA5342_3500 (dnaE)
Enzymes [BR:
plf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PANA5342_3500 (dnaE)
DNA replication proteins [BR:
plf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PANA5342_3500 (dnaE)
DNA repair and recombination proteins [BR:
plf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PANA5342_3500 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CCF10893
LinkDB
All DBs
Position
complement(3653050..3656532)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHGA
GVKPIIGADFNVASELMGDELTQITVLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDW
LAELQEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFLELVRTGRPDEES
YLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDPKRPRHYSPQQYM
RSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVMKSREGL
EERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQYPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLPPIDIATIPLEDKKSFDML
QRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQFHVNDEGEIVYGIGAIKG
VGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALMS
ALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVTPWPEQVQLDGERETLGLY
LTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARAKLRFGAAWRISPSD
RLLNDLRSLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccccgttttatacatctgcgtgtacacagcgactattccatggtcgacggc
ctggcgaaaaccggcccgttgatcaagaaagcggctgcgctgggtatgccagccatcgcg
attaccgacttcaccaacctttgcgggctggtgaaattttacggcggtgcgcacggggca
ggggttaaaccgattatcggggcagattttaacgttgccagcgagttgatgggcgatgaa
ctgacccagattaccgtgctggcggcaaataataccggctatcagaatctgacactgctg
atttcccgtgcttaccaacggggttacggtattgctggcccgattatcgatcgcgactgg
ctggccgaactgcaggaaggactgattctgctgtccgggggccgtcgaggggatgttggc
cgcagcctgctacgaggtaacagcgcgctggtgtctgactgcctggctttctatcaacag
cattttgccgatcgctacttcctggagctggtccgtaccggtcgtcctgatgaggagagc
tatctgcatgcggcggttgagctggcgattgcagaagggatccccgttgttgccacgaat
gaagtctgcttcatcaatgaagaagatttcgacgcccacgagatccgcgttgccattcat
gatggttacacgctcgacgatccgaaacgtcctcgccattacagtcctcagcaatacatg
cgcagcgaagaggagatgtgtgagctgttcgcggacatcccggaagcgctggaaaacagc
gtagagattgctaagcgttgtaacgtcacggtccggctgggtgagtactttctgccccag
ttcccgacaggggatatgaccaccgaagactttttggtgatgaaatcccgcgaggggctg
gaagagcgcctcgcgatgctgtttccggacgaagccgtacgggccgaaaagcggccggaa
tacgatgaacgtctggaagtggaactcaacgttattaaccagatggggttccctggctac
ttcctgatcgtgatggagtttatccagtggtcgaaagataacggcgtgccggttgggccg
ggccgtggttctggtgcgggatccttagtcgcctatgcgctcaagatcactgaccttgat
ccgctcgagttcgacctgctgttcgaacgtttcctgaacccagaacgtgtttccatgccc
gacttcgacgtcgatttctgcatggagaaacgtgaccaggtgattgaacacgtggccgac
atgtacggccgcgaagcggtgtctcagattattactttcggcaccatggcggctaaggcg
gtcattcgtgacgtgggacgcgttctgggccatccctatggttttgtcgatcgtatttca
aagctggtgccgcccgatccgggcatgacgctggaaaaagcctttgctgcagaaccgcaa
ctgccggaaatttatgaggccgatgaggaagtcaaagcgctaattgatatggcgcgcaag
ctggaaggtgttacgcgaaacgccggtaagcacgcgggtggagtagtgatcgcgcccacc
aaaattaccgattttgcgccactgtactgtgacgaaaacggccagtatccggtgacgcag
ttcgataaaaatgatgtggaatatgccggcctggtgaagtttgacttcctggggctgcgt
acgctgaccattatcgactgggcactgaagatgattaacccgcgccgtgaaaagcagggg
ttgccgccgatcgatatcgccaccattccgcttgaagacaagaaaagctttgatatgctg
cagcgcgcggaaaccacggcggttttccagcttgaatcgcgcggcatgaaagatctgatc
aagcgtctgaaacctgactgctttgaagacatgatcgccctcgtggcgctgttccgccct
ggcccgttgcagtcgggcatggtggataactttatcgaccgtaagcacggtcgggaagcc
atctcctatcctgatatccagtggcagcatgaaagcctgaagccggttctcgagccgacc
tacggcattatcctgtatcaggaacaggtgatgcagatcgcccaggtcctgtctggctat
acgctcggcggggcggatatgctgcgtcgcgccatgggtaaaaagaaacccgaagagatg
gccaagcagcgctccgtatttaaagacggcgctgaaagcatgggcatcgacggcgaactg
tcgatgaaaatcttcgatctggtagagaaatttgccggatacggttttaacaaatcgcac
tctgcggcttatgcgctggtgtcctatcaaacgctgtggctgaaagcgcattatccggcc
gaatttatggctgcggtcatgacggcggatatggataacacggaaaaagtggttggcctg
gtggatgagtgctggcgcatggggctaaaggtcctgccgccggatattaactcgggcctg
tatcagttccacgtcaatgatgagggcgagatcgtttacggcatcggcgccattaaaggc
gtcggtgaagggccgatcgaagcgatcatcgatgcgcgtaacgagggcggttatttccgg
gagctgttcgatctctgcgcgcgcaccgataccaaaaagatcaaccgtcgggtcatggaa
aaactgatcatgtcaggtgcctttgatcgtctcggcccacaccgcgctgccttaatgagc
gcccttaacgatgcgctgaaggcggcggatcagcatgcgaaagccgaagcgatcggccag
gcggacatgtttggcgtactggccgacgagcctgaacaggtagaacagtcctatgccagc
gtgacgccctggccggaacaggtgcagttggatggtgaacgagaaacccttgggttgtat
cttaccggccatcctattaatcagtatttaaaagaaattgagcgttacgttggcgggatg
cgtttgaaagatatgcatcctaccgatcgtggtaagattaccgttgcggcaggtctggtg
attgctgcgcgtgtaatggtgaccaaacgcggcaaccgaattggtatttgtacacttgac
gatcgttccggccgtctcgaagtcatgttatttaccgatgcgttagataaataccagcaa
ctgctggagaaagaccgtatcctgatcgtcagcggacaggtcagctttgatgacttcagt
ggtgggcttaaaatgaccgcccgggaagtcatggacatcgacgaagcgcgcgaaaaatac
gcccgtggacttgctatctcgctgacggacaggcaaattgatgaccagctattaaaccga
ctccgtcagtccctggaacctcatcgttcagggacaattccagtgcatctctactatcag
agagccgacgcgcgagcgaagctacgctttggtgcagcgtggcgaatttcgcccagcgat
cgtttactcaacgatttgcggtcgttaattggatcggagcaggtggaactggagtttgac
taa
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