Paucimonas lemoignei: NCTC10937_00764
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Entry
NCTC10937_00764 CDS
T05492
Symbol
rnr
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10937_00764 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plg03019
]
NCTC10937_00764 (rnr)
03016 Transfer RNA biogenesis [BR:
plg03016
]
NCTC10937_00764 (rnr)
Enzymes [BR:
plg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC10937_00764 (rnr)
Messenger RNA biogenesis [BR:
plg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10937_00764 (rnr)
Transfer RNA biogenesis [BR:
plg03016
]
Prokaryotic type
tRNA degradation factors
NCTC10937_00764 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
TRAM
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
SQF94718
LinkDB
All DBs
Position
1:858627..861260
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AA seq
877 aa
AA seq
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MADWQSLDPEAAREAEKYENPIPSRELILAHLSERGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRAHETVVGRYFEESGIGFVIPDNPKIQQEV
LVTPGRNNNAKIGQFVEVKITHWPTPRFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEDKDKENRVDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYVFYEAVIHSHARLTYNKVSSMLEQPKTTEARQLRGEYPDVLP
HLKQLYALYKVLLGARHVRGAIDFETQETRIIFGTERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLE
TVRGRPDYHLIQTVMLRSLSQAVYSSDNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSKQDTPHVRRAGGTIIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKRRGGETEPAAEKTAEKAASGR
ASSKRPAKAKAETEAYRPSDAAAKNAEVRKSRELKQALLAEAKGGSKASSGKPSRAESGP
SSSGKPAKSSKHRKGPPKAGSAPAAKSGGARKPKAKS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctatccccagccgtgaattgattctggctcatctgtccgaacgtggttcgccggcagct
cgtgagcaactggtggaagaatttggcctgacaactgaagatcagatcgaagccctgcgc
cgccgcttgcgagccatggagcgcgatgctcagttgatctacacgcgtcgcggcacctac
gcgccggtggacaagctggacctgatcctggggcgcatctccgggcatcgcgacggtttc
ggcttcctggtccccgatgacggttccgacgacctgttcatgagcccggcacagatgcgt
ctggtgttcgatggcgaccgtgccctggcgcgagtttcgggtctggatcgtcgtggtcgc
cgtgaaggcgtgatcgttgaagtcatttcccgcgctcacgaaacggtcgttggccgttac
ttcgaagagagcggcatcggctttgtcatcccggacaacccaaaaatccagcaagaagtg
ctggtgacgcctgggcgcaacaacaacgcgaagatcggtcagttcgtcgaggtgaaaatt
actcactggccaacgccgcgcttccagccgcaaggcgatatcgtcgaagtcgtgggcaac
tacatggctcccggtatggaaatcgacgtcgcgctgcgtacgtacgatattcctcacgtc
tggcctgaggcggtgctcaaggaggccgccaagctcaagcctgaagttgaagacaaagac
aaagaaaaccgcgtcgacctgcgccatttgccattcgtgaccatcgatggtgaagacgct
cgcgacttcgatgatgcggtttactgcgaagccaaacccggcaagctgcgcctgttctcg
ggcggttggaagctgtacgtcgccattgccgacgtgtcgagctacgtgaagattggctcg
gcgctggatgcagagtcccaggtgcgcggcaactcggtgtatttccccgagcgcgtggtg
ccgatgctgcctgagcagctgtccaacggcctgtgctcgctgaatccgcacgttgatcgt
ctggccatggtctgcgagatgaccatctccaagaccggcgaaatgactgactacgtgttc
tacgaagcggttatccactcccacgctcgcctgacctacaacaaggtcagctcgatgctg
gagcagccgaaaactaccgaagcccgtcagctgcgtggcgaataccctgacgtactgccg
cacttgaagcagctctatgcgctgtacaaggtgctgctgggcgcgcgtcatgttcgtggt
gcgatcgattttgaaactcaggaaacccggatcatcttcggcactgagcgcaagatcgcc
gaaatccgcccgaccacccgcaacgacgcccacaagctgatcgaagagtgcatgctggca
gccaacgtggccaccgctgaattcctcaagaagcacgagattcctgcgctgtaccgcgtc
cacgacggtccgccgccagagcgcctggaaaaactccgcgccttcctgggtgagctgggt
ctttccctgcacaagggcaaggacggtccgtcgccgaaggattatcaggcgttgctggaa
accgttcgcggtcgtccggattaccacctgatccagaccgtgatgttgcgctcgttgagt
caggcggtttacagctctgacaacaacggccacttcggtctgaattacgaggcatacacc
cacttcacctcgccgattcgtcgttacccggatttgctgacgcatcgcgctattcgaagc
gtaatccgttccaagcaggacacgccgcacgtgcgccgtgccggcgggaccatcattccg
aaagcgcgcatctatccgtatgacgaagctgcgctggagcagttgggcgagcagtgctcc
atgagcgagcgccgtgccgatgaagcaacccgcgacgtagtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgagtcgttcccgggtgtgatcacggccgtaaccggcttt
ggtctgttcgttgagttgaccgatatctatgttgaaggtctggtgcacgtcaccgccttg
ccaggtgattactatcacttcgatcctgtgcatcaccgcctggcgggcgagcgcacgggt
cgtagcttccgcttgggcgacaccgttgaagtgcgcgtcatgcgcgttgatctcgacgag
cgcaagattgatttcgagatggctgaaaaaaccatcagcgcgccgattggtcgcaagcgt
cgtggtggcgaaactgagccagcggctgaaaaaacggctgaaaaagccgcttcaggtcga
gcatcgagcaagcgtccagccaaggccaaggctgaaactgaggcctatcggccaagcgat
gctgccgcgaaaaacgccgaagtccgtaaaagtcgcgagctgaaacaggctctgctggca
gaagcgaagggtggtagcaaggcatcgtcgggaaagccgagtagggcagagtcgggcccg
tcgtcttcgggcaagcctgccaaatcaagcaaacaccgtaaaggcccgccaaaagcgggt
tctgccccggctgcgaaaagcggcggtgcacgtaaacctaaggccaagtcatga
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