Paucimonas lemoignei: NCTC10937_01246
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Entry
NCTC10937_01246 CDS
T05492
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NCTC10937_01246 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_01246 (sbcB)
Enzymes [BR:
plg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NCTC10937_01246 (sbcB)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NCTC10937_01246 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC10937_01246 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC10937_01246 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
SQF96435
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All DBs
Position
1:1391201..1392631
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AA seq
476 aa
AA seq
DB search
MTSTIFWYDYETTGINPRNDRALQMAGIRTDAELNEVAAPVNIYCQPSDDILPHPAACVI
TGITPARLAEQGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDVVRAAYALRPDGIVWPEEDGRVTLKLERLTAANGIDHGQAHDALSDV
RATIALARLIREKQPKLYDYLFQLRSKQKVQEQITLMQPLVHISGRFSAARHYVGVVLPL
AWHPQNRNALIVCDLHQDHMPLLAEDPQTLRRRLYTRRDELAEGELPVPLKLLHINRCPV
VAPLKVLRSQDQQRLELDMGVFEERTRQLVEGQAIWLEKLKAIYAPDEFGANDDPEQQLY
DGFIGDRDRRLCEQVRSAEPEELANNAWPFDDARLPELLFRYRARNFAETLSGEEQQRWH
LFCQNRLTDAQWGAPNTLESFARSLVELSIKATPEQLNVLAQWQDHVEQLRQRLGL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccaccattttctggtacgactacgaaaccaccgggatcaatccccgcaatgat
cgcgccctgcagatggcggggatccgtaccgacgcagagctcaatgaggttgccgcgccg
gtcaatatctactgccagcccagcgacgacatcctgccgcacccggcggcgtgtgtgatt
accggtatcactccagcgcgtctggccgagcagggcttgtgcgaggccgatttcatgacc
cgggtgcatgccgagctggccgcgccgggcacttgcggggcgggttacaacaccctgcgt
ttcgatgatgaggtgacgcgctacagcctctaccggaatttcttcgacccttatgcgcgt
gagtggcaaggcggcaacagccgctgggacttgatcgacgtggtacgtgccgcttatgcc
ctgcgcccggacggcatcgtctggcccgaagaggacgggcgcgtcacgctcaagcttgag
cgcctgacggccgccaatggcattgatcatggtcaggcccatgacgcgttatccgatgtg
cgagccactattgccctggcgcgcctgatccgggaaaaacagcccaaactctacgattat
ctgttccagttgcgcagcaagcagaaagtccaggagcagataacgctgatgcagccgctg
gtgcatatctccggacgtttttcagcggccagacattatgtcggcgtggtactgccgctt
gcctggcacccgcagaatcgtaatgcgctgatcgtctgtgacttgcatcaggatcatatg
ccgctgttggcagaggatccgcaaactttgcgccgacgtttatatacccgccgtgacgag
ttggccgaaggggagttaccggtgcctctcaaacttcttcatataaaccgttgcccggtg
gtggcgcctctgaaggtgttgcgcagccaggaccaacaacgcctggagctggacatgggc
gtgttcgaggaacggacccggcagttggtcgaagggcaggctatctggctagagaagcta
aaggctatttatgcgccggatgagttcggtgccaatgatgatcctgagcagcagttgtat
gacgggtttatcggtgatcgtgaccgcaggctgtgtgaacaagtgcgcagtgcagagcct
gaagagctggcaaataacgcttggccttttgatgatgcaaggctgcccgagttgttgttc
cgttatcgggcgcgaaactttgctgaaacactgagcggggaagagcaacagcgctggcac
cttttttgtcagaatcgtctgactgacgctcaatggggcgcgcccaatacattggagagt
ttcgcccggtcgctggtagaactttcgattaaagccaccccggagcagctcaacgtattg
gcgcagtggcaggaccatgtcgagcaattgcgtcaacgactggggttatga
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