Paucimonas lemoignei: NCTC10937_02632
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Entry
NCTC10937_02632 CDS
T05492
Symbol
recQ_3
Name
(GenBank) ATP-dependent DNA helicase domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10937_02632 (recQ_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plg03019
]
NCTC10937_02632 (recQ_3)
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_02632 (recQ_3)
Enzymes [BR:
plg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10937_02632 (recQ_3)
Messenger RNA biogenesis [BR:
plg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10937_02632 (recQ_3)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC10937_02632 (recQ_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SQF98503
LinkDB
All DBs
Position
1:2954729..2957206
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AA seq
825 aa
AA seq
DB search
MQAQWNALQAALLNPGLVCETSTLSESFFIRLLKVFRDLKSGPADRAAVCRDALGCALAH
SIVDPVLRLPANAVSDMHLSRAGVVRDAMTGYVRMADVQNNDALDVYGHHPRRHLKAVPM
DVALRQRLKNEQFASYQGLGQQAAIRTVLTSPPDSTLIINLPTGSGKTLVIHALSLFSGK
QKLVLVIVPTVGLALEQATRAAEVLNRADCGHGGSYVLYGGQADAEHQQVLERLKDGGQR
ILFCSPELASGKLRPALFRLAQQGQLEALVVDEAHIIDHWGAGFRPEFQLLAPLFRSLRE
HSPRGIRTVLMSATFSDPTLQLLKDSFVLEGKQAIEIHGSFLRPELNFNVLKTADPTEHQ
LAVLDALRCLPRPLILYTTQKKEAENWKHILLGNGFTRVGLFHGSTAADQRDALIRKWGD
DELDIMVATSAFGVGMDKSGVRSVLHAAVPESLDRFYQEAGRGGRDGTACWSWLIYHPGQ
LSVAERLSQEKLISAELGVERWKMLLESRESSGEYFTISRSALHRGLPRHSKRNEKWNLR
TLQLMQRAGVIRLFFTPPEPPQFEGEITPENEQLLNDYFEDYFSRIGVQILIDAHLAPEV
WQQQVAPRRDQEKKARADGFSRLTRWLKDTRQPLCWQLDEFYRPSGIAPERSCGGCPGCR
NQGRGAFTPTLGHLFHLRGVEPLSVPSWMPSSQLLRVRYRPESYARVTSKAMLHNWRFWL
QNLLRTRQVQAVRASQVVLDEMYQDDALKTLPFWCALAPQDSAGGWLELVLLMPGETHLP
LPSFDDPLRVIVAPEGLADPYLPYRTWWECHPGSKVLENFVQESQ
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcacagtggaacgccctacaagcagcattgttgaatccaggcttagtttgcgag
actagcacactgtctgaatcgttttttatacggttattaaaagtttttcgggatcttaaa
tcaggtccggcggaccgcgcggcggtgtgccgggatgctttgggttgtgcattagcgcac
agcatcgtcgaccccgtgttgcgactacctgccaatgccgttagtgacatgcatctttct
cgtgctggagtagtccgggatgccatgacgggttacgtgcggatggcggatgttcaaaat
aatgatgcgcttgatgtttatggacatcatccccgtcgacatctgaaggccgtgccaatg
gatgtagctctgcggcaaaggctcaaaaatgagcagttcgcttcataccaggggcttggg
cagcaagcagcaatacgtacagttttaacatcccctcctgacagtacgctgatcatcaac
ctgccaactggtagcggaaagaccctagtcattcatgcgctgagcctgttttcgggcaag
cagaaactggtactggtcattgtaccaacagtagggttggcgctggagcaggcaacccgt
gccgctgaggtacttaaccgtgcagactgtggtcatggaggtagttatgtcttgtatgga
ggccaggcggatgctgagcaccagcaagtcctcgagcgtttgaaagacggggggcagcgt
attttgttctgctcgccggagttagctagcggcaaactccggccggcgctttttcggttg
gcacagcaagggcagttggaggctctggttgttgacgaggcgcatattattgaccactgg
ggggcaggatttcgtcctgaattccagttgctggcacccctgtttcgctcgctgagggag
cattcaccgagaggcatacgtacagtcttgatgtcggcaaccttcagtgatccgacgctg
cagttgcttaaagattcttttgttctggaaggcaaacaagccattgaaattcatggcagc
tttttacgcccagaattgaattttaatgtgttgaaaaccgcggaccctacagaacatcaa
cttgctgtattggacgcgcttcggtgtttacctcggccactgattttgtataccacacag
aaaaaagaggctgaaaactggaagcatatactgcttggcaatgggttcactagagtcgga
ttattccatggctcaacagccgcagatcagcgcgacgcgctgattcgcaagtggggagat
gacgaactagacatcatggtcgctacctccgccttcggtgtaggcatggataagtccggg
gtgcgttcggtactgcatgcggctgtgccggagagtttagatcggttctatcaggaggct
ggtcgaggggggcgtgacggtacagcctgctggtcttggcttatctaccacccaggacag
ttgagtgtggcggaaagactttcgcaggagaagttgatctctgcggagttgggggtggag
cgctggaaaatgttgttggaaagcagggagagcagcggtgaatatttcacaatttctcga
tctgctctgcatcgcggcctgccacgacatagcaagcgtaatgaaaaatggaacctgcgt
accctgcagttgatgcagcgtgcgggggttattcgtctgttttttactccacccgaaccg
ccacagttcgagggtgagataactccagagaatgagcagcttcttaatgattattttgag
gattatttcagccgtattggcgttcagatcctcattgacgcccatttggctcctgaggta
tggcagcaacaggtagccccgcgccgcgatcaggaaaaaaaggccagggctgatggtttt
tctcgtctaaccagatggctaaaggacacgcgtcaaccgctatgttggcagttggatgag
ttttatcgccctagcggcatcgcccctgaacgcagctgtgggggatgtcctggctgtcgt
aatcaaggacgaggagcttttaccccgacgctggggcatctattccatctgcgcggcgtg
gagccattatctgttccgagttggatgccatcttcacagttgttgcgggtccgctaccga
cctgagtcgtacgctagggttacgtccaaagcaatgctgcacaattggcgtttctggttg
cagaacttactgcgtaccaggcaagttcaggctgtacgcgccagtcaggtagtgctggat
gagatgtaccaagacgacgcccttaagacgctaccattctggtgtgcgcttgcacctcaa
gatagtgctgggggatggctggagttggtgctactgatgccaggagaaactcatttgcca
ttgccgagttttgacgatccgctaagagttattgtcgcacctgaaggattggctgacccg
tatttgccatatcgcacgtggtgggaatgtcaccccggcagcaaggttttggaaaatttt
gtacaggagtctcaataa
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