Paucimonas lemoignei: NCTC10937_03934
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Entry
NCTC10937_03934 CDS
T05492
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10937_03934 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plg03019
]
NCTC10937_03934 (deaD)
03009 Ribosome biogenesis [BR:
plg03009
]
NCTC10937_03934 (deaD)
Enzymes [BR:
plg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10937_03934 (deaD)
Messenger RNA biogenesis [BR:
plg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10937_03934 (deaD)
Ribosome biogenesis [BR:
plg03009
]
Prokaryotic type
rRNA helicases
NCTC10937_03934 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
SQF99768
LinkDB
All DBs
Position
1:complement(4358098..4359777)
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AA seq
559 aa
AA seq
DB search
MTQEFGGFAAFELHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
KQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVGDAESTHGELLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERERPLVPNNAPRERSDRSSSGDRPERSGDRERRAPVPLAE
GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaattcggcggcttcgccgcttttgaacttcatccaaatatccttgcagcc
gtcatcgcgactggctacgaagaaccttcggccatccagcagcagtcgatcccgatcatc
atggccggtcacgacatgattggtcaggcacagaccggtaccggcaaaaccgccgcgttc
gctctgccgatcctgcatcgcatcgatccagccaagcgcgaaccgcaagcgctgatcctg
gcaccgacccgcgagctggccctgcaagtggccaccgctttcgaaacttacgccaagcaa
atgccgggcgttaccgttgtggctgtctacggcggtgcgccgatgggcccgcagctgaaa
gctatccgcaacggcgcgcagattgttgtcgccaccccgggccgtctgtgtgaccacctg
cgtcgtgacgagaaagtcctggcgaccgtgaatcacctggtgctggacgaagcggacgaa
atgctgaagctcggcttcatggacgatcttgaagtcatcttcaaggcgatgcctgaaacc
aagcagaccgttctgttctcggctaccttgccgcaatcgatccgtgccattgccgagcgc
catctgcgcgatccaaagcacgtcaagattcagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttccgctgtcctgagcctgctt
gaagtcgaagacttcgatgccctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagcgctctggaagccaaaggttacaaggctgcggccctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgaatccctcaaagatggccgtctggacatcgttgtg
gcgaccgacgttgccgctcgtggtctcgacgttccgcgtatcactcacgtgttcaacgtt
gacatgccttacgaccctgagtcgtacgttcaccgtatcggccgtaccggccgtgcaggt
cgcgaaggtcgtgctttgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaggttgcggaagtccgcctgccggatgcccaggccgttctc
gatgcgcgcatcaagaaattgaccaatagcctgtcgccgctggttggcgatgctgagtcg
actcacggcgaactgctggatcgcctgactgccgatatcggttgcagcccgcgtgccctg
gccgcagccctgctgcgcaaggcaaccaacggtcaggccctgaccctggctgccatcgag
cgcgagcgcccactggtgccgaacaacgccccgcgtgagcgtagcgatcgttcgtcttcc
ggtgatcgtccagagcgcagcggtgatcgtgagcgtcgcgctccggtcccactggccgaa
ggtcgtgctcgttgccgtaccgcgctgggtgcgcgtgatggcatcgctgccaagaacctg
ctgggtgcaatcctcaacgaaggcggtcttgcccgcgaagctatcggccgcatccaggtg
cgtgacagcttcagcctggtagagctgccggaagatggccttgagcgtctgctgaccaag
ctcaaggacacccgcgttgcaggcaagcagctcaagctgcgtcgctatcgcgaggactga
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