Paucimonas lemoignei: NCTC10937_04275
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Entry
NCTC10937_04275 CDS
T05492
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10937_04275 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plg03019
]
NCTC10937_04275 (rhlB)
Enzymes [BR:
plg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10937_04275 (rhlB)
Messenger RNA biogenesis [BR:
plg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10937_04275 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
SQG00102
LinkDB
All DBs
Position
1:4766513..4768000
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AA seq
495 aa
AA seq
DB search
MLKALKKMFGKGEVEPLAAGPVPTSPAPAGKTESALRTNSAPVSAPAPAVAVAQDEIAQP
AATEPSSIARPKAERPRRERAPKPPVIPWKLEDFVVEPQEGKTRFHDFALAPELMHAIQD
LGFPYCTPIQAQVLGFTLKGQDAIGRAQTGTGKTAAFLISIISQLTQTPPPKERYMGEPR
ALIIAPTRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRL
LDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPQKSERQTLLFSATFTEDV
MNLAKQWTTDPAIVEIEALNVASENVEQHIYAVAGADKYKLLYNLINDNGWERVMVFANR
KDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGI
SHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEEKLGRKISCETPP
TELLRAVVRKPAQPV
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcacttaaaaagatgttcggtaaaggcgaggttgagccgctcgcagctggc
cctgtccccacctcccccgctcccgccgggaaaaccgaaagcgccttgcggacaaacagc
gcccctgtttcagccccggctccggccgttgccgtcgctcaagacgagatcgcgcagccc
gcggccactgagccgagcagcatcgcccggccaaaagcagaacgcccacgtcgtgaacgt
gcgccaaagccgcccgtcattccctggaaactcgaagacttcgtcgttgaaccccaggaa
ggcaaaacccgcttccacgacttcgccctcgcgccagaactgatgcacgcgatccaagac
ctcggttttccttattgcacgccgattcaggcgcaagtcctgggcttcacactcaagggc
caggacgccattggtcgcgcgcagaccggcaccggcaaaaccgcagcctttctgatttcg
atcatctcgcaactcacccagacgccgccgcccaaagaacgctacatgggtgagccccgc
gcgctgatcatcgccccgacccgtgagttggtggtgcagattgccaaggacgccgctgac
ctgaccaagtacaccgacctgaatgtcatgacgtttgtgggcggcatggacttcgacaag
cagctcaagcagctcgaagcacggcattgcgatattctggtcgccacccctggccgtttg
ctggacttcaaccagcgcggtgaagtgcacctggacatggtcgaagtcatggtcctggac
gaagccgaccgcatgctcgacatgggcttcattccgcaggtccgccagatcatccgccag
acgccgcagaaaagtgaacgtcagaccctgctgttctcggccaccttcaccgaagacgtg
atgaacctggccaaacagtggaccaccgatccggccatcgtcgaaatcgaagccttgaac
gttgccagcgaaaacgttgagcagcacatctatgctgtagccggtgccgacaaatacaaa
ctgctctacaacctgatcaacgacaacggttgggagcgagtcatggtctttgccaaccgc
aaagacgaagtgcgccgtattgaggagcgcctggtgcgtgacggcgtcaacgccgcgcag
ctgtcaggcgacgtgccgcagcacaaacgcatcaagacgctggaaggcttccgcgaaggc
aagattcgcgtgctggttgcaaccgacgtggccggtcgcggcattcacatcgacggcatc
agccacgtgatcaacttcaccctgccggaagtgccggacgactacgtacaccgtatcggc
cgtactggtcgcgcgggcgctgcaggcgtgtcgatcagcttcgccggtgaagacgactcg
taccagctgccatcgatcgaagagaagctgggccgcaagatcagctgcgaaacaccgccg
accgagctgttgcgggcggtagttcgcaagcctgcgcagccagtttaa
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