Paucimonas lemoignei: NCTC10937_04509
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Entry
NCTC10937_04509 CDS
T05492
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10937_04509 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plg03019
]
NCTC10937_04509 (pnp)
03016 Transfer RNA biogenesis [BR:
plg03016
]
NCTC10937_04509 (pnp)
Enzymes [BR:
plg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NCTC10937_04509 (pnp)
Messenger RNA biogenesis [BR:
plg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC10937_04509 (pnp)
Transfer RNA biogenesis [BR:
plg03016
]
Prokaryotic type
tRNA degradation factors
NCTC10937_04509 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
SQG00327
LinkDB
All DBs
Position
1:complement(5031599..5033704)
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKTADPSKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDVAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPNYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAIKELAAEAAKPTWAWEAKPEA
TALLAAIRSEFGDAISQAYTITVKADRYARLGELKDQIVAKLSGEEGQPTSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRIVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagaaatttcaattcggtcaatcgaccgtaaccctcgagactggc
cgtattgcccgtcaagcttcgggtgctgtattggtcaccgttgacgacgacgtcaccgtt
ctcgtgactgtggtcggcgccaagacagcagacccaagcaaaggcttcttcccactttcc
gtgcactaccaggaaaaaacctacgctgcaggtaagatccctggtggcttcttcaagcgt
gaaggccgtccttccgaaaaagaaaccctgacttcgcgtctgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaaaaccgatccggacgtcgctgcgatgatcggtacttcggcagcgctggcgatc
tccggcatcccgttcgatggcccgattggcgccgcgcgcgttgctttccacgagagcacc
ggctacctgctgaacccgaactacgagcaactcaaggcttcgagcctggacatggtagtt
gccggtacgtcggaagccgtactgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgctgtactgttcgcccacgatgagttccaggtcgtgatcaacgccatc
aaggaactggctgctgaagctgccaagcctacctgggcgtgggaagccaaaccagaagcc
actgcgctgctggccgctatccgttccgagttcggcgacgcgatttcccaggcttacacc
atcaccgtcaaggccgaccgttatgctcgcctgggtgagttgaaagaccagatcgtcgcc
aagctgtccggtgaagaaggtcagccgacttccagcgaagtcaaagctgctttcggcgaa
atcgaataccgcaccgtgcgcgagaacatcgttaacggcaagccacgtatcgatggccgt
gacacccgcactgttcgcccgctgaacatcgaagtcggcgttctgccgaagactcacggt
tcggcactgttcacccgtggtgaaacccaggcactggttgttgcgacactgggtaccgcc
cgtgacgcacagctgctggacaccctggaaggcgagaagaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgtatgggtggcgctggtcgtcgc
gaaatcggtcacggccgtctggctcgtcgttccgttcaggccatgctgcctgctgccgac
gtgttcccgtacaccatccgtatcgtctcggaaatcaccgagtccaatggttccagctcc
atggcttcggtctgcggcgcttcgctggctctgatggacgctggcgttccgatgaaggca
cctgttgccggcatcgccatgggcctggttaaagaaggcgagaagttcgccatcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtacctcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgctctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcattggtcagtcgcgtaccgagctgtcggaaaatgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgttatcggtaaaggtggcgcgaccatccgtgcaatc
tgtgaagagaccaaggcttcgatcgatatcgaagatgacggctcgatcaagattttcggc
gaaaccaaagaagcggctgaagcagcacgtcagcgcgttctgggtatcaccgctgaagcg
gagatcggcaagatctacgtcggtaaggttgagcgtatcgtcgatttcggcgcattcgtg
aacatcctccctggcaaagacggcctggttcacatctccatgctgagcgacgctcgtgta
gagaaagtgactgacatcttgaaagaaggtcaggaagttgaagtactggtactggacgtg
gacaaccgcggccgtatcaagctttcgatcaaagatgtcgccgctgcaaaagcatcgggc
gtctga
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