Paucimonas lemoignei: NCTC10937_04707
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Entry
NCTC10937_04707 CDS
T05492
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC10937_04707 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_04707 (recB)
Enzymes [BR:
plg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC10937_04707 (recB)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC10937_04707 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
Msb1-Mug8_dom
BP28CT
Motif
Other DBs
NCBI-ProteinID:
SQG00518
LinkDB
All DBs
Position
1:complement(5294370..5298074)
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AA seq
1234 aa
AA seq
DB search
MTDIQHTASLALRFPLRGSQLIEASAGTGKTFTISALYVRLVLGHGGDAAGFGRELLPPQ
ILVVTFTDAATKELRDRIRIRLAEAARFFREEISAPDELINELRDQFSAEQWPACASRLD
IAAQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSNLLGEVLRDYWRLFCYPM
SGDALTWVRSNWSGPAALLPKVRSLFGSERAVPTQAPAELITASLQQRREALKALKSPWT
NWAAELHAICIDGVACKVVDGRKMQERYFRPWFEKLTAWAADDELEELDLGTGFTRLTPE
GIAEAWKSNPPSHPAFEAMVELKVALDTLPTPDAAVLEHAAHWVGVRFEAEKRRRAEMGF
DDMLLRLDAALQSAGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRLEENDSETG
LFLIGDPKQAIYAFRGADIYTYLRARQATAGRWHTLDTNYRSSHAMVEAVNHVFLRAEQR
PEGRGAFLFREGNDNDVPFFGALSQGKKDALQLDGTPLAALNVWHMASDQPVSGAAYRQQ
LAASCASEIVRLLNAGQQGRAGFAAPDKELKGVLPADIAILVRDGKEAQAVRGELSARGV
RSVYLSDKDSVFAAQEAHDVLAWLKACAEPDSERTLRAALACITLALPLAELERLNQDEL
AWEARVMQFRGYHLIWRNQGVLPMLRRLLHDFQLPQTLIARTDGERVLTNLLHLSELLQQ
AAAELDGEQALIRHLGEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPF
ICSSKPVDGSRLPLHFHDENRKAQVSLKPTAALIEQSDNERLAEDLRLLYVALTRAEYAC
WMGVADLKRGNASSSMLHRSALGYLLGGGMPLTESAGLSSWLRDLSEGCNGVSVEAVPEP
TAETFSPPRNEATLLKPLNPKRRAAENWWIASYSALRIGDTITTGGDESPDSPQAQKLFD
DERLDPEAPREVLVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFSAVADKPDVLEKQVGP
RCNRRGWTGWIGTLTAWLQQVLTMPLSLADDTQSVALGEMDQPNQYRIEMEFWFACHKVD
VAQMDALVRRYTHDNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKSNWLGPDDES
YTQDAMTSAILDNRYDLQYVLYLLALHRQLKARLADYDYDQHMGGALYIFLRGAYASTQG
AYFTRPPRELIEGLDLLFQGKSVTQEFVLTGEPA
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgactgacatccagcacactgcatccctggcgctgcgtttcccgttgcggggcagccaa
ctgatcgaagccagcgcaggcaccggcaagaccttcactatctcggcgttgtacgtgcga
ctggtgctgggccatggcggtgatgcagcgggtttcggccgcgaattactgccgccacaa
atcctcgtcgtcaccttcaccgatgccgccaccaaagaactgcgtgaccgcattcgcata
cgtctggctgaagctgcgcgcttctttcgcgaagaaatcagcgcgccggacgagctgatc
aacgagctgcgtgatcaattcagtgccgagcaatggcccgcctgcgccagtcgtctggat
atcgccgcgcaatggatggacgaagccgccgtatcgaccattcacagttggtgtcagcgc
atgttgcgcgagcatgccttcgacagcggcagcctgttcacccagaccctggaaaccgac
cacagcaatttgctgggcgaagtgctgcgcgattactggcggctgttctgctaccccatg
agcggcgatgccctgacctgggtacgcagcaactggagcggccctgcagcactgttacca
aaagtccgcagcctgttcggcagcgaacgcgcagtcccgactcaggcacctgccgagctg
atcaccgcgtcgttacaacaacgtcgcgaagccctcaaggcgttgaagtctccctggaca
aactgggcggctgaactgcacgcaatctgcatcgacggtgtggcctgcaaagtggtcgac
ggtcgcaagatgcaggagcgctacttccgcccgtggttcgagaagcttaccgcctgggcg
gccgacgatgagctcgaagagcttgatctgggcaccggtttcacccgtttgaccccggaa
ggcatcgccgaagcctggaagagcaacccgccgtcgcacccggcgttcgaagccatggtt
gaactcaaggtcgcgctggacacgctgccgacgccagatgctgccgtactggagcatgct
gcccactgggtcggcgtgcgctttgaggcggaaaaacggcgccgcgccgagatgggcttc
gacgacatgctgctcaggctcgatgccgcgctgcaaagtgccggtggcgaacgcctggcg
acgctgattcgtgaacagtttcccgtggcgttgatcgatgaattccaggacaccgacccg
gtgcagtaccgcatcttcgagagcatctaccgcctcgaagaaaacgacagcgaaaccggg
ctgttcctgatcggtgatcctaaacaggcgatctacgcctttcgcggtgccgacatctac
acctacctgcgcgcccgccaggccaccgccgggcgctggcatacgctggacaccaactac
cgctcgagccacgccatggttgaagcggtcaaccatgtgttcctgcgcgccgaacaacgg
cctgaagggcgcggggcttttctgttccgcgagggcaacgacaatgacgtgccattcttc
ggcgcgctctcccagggcaagaaagacgcactgcaactagacggcacgccgctggctgca
ctgaacgtttggcacatggcgagtgatcaaccggtgtcgggcgctgcgtatcgtcaacaa
ttggccgccagctgtgccagtgaaatcgttcgcctgctcaatgcaggacaacagggccga
gccggtttcgccgcgccggacaaagagctcaaaggcgtgctgcccgcagacattgcgatt
ctggtgcgcgatggcaaagaggcccaggctgtgcgcggcgagttgtcggcgaggggtgtg
cgcagcgtttacctgtccgacaaggattccgtgttcgccgcccaggaagcccacgacgtg
ctggcctggctcaaggcctgtgccgaaccggattccgagcgcaccctgcgcgccgcgctg
gcctgcatcaccctggcattgccgctggctgaactggaacgtttgaatcaggacgaactg
gcctgggaagcccgggtcatgcagttccggggctatcacctgatctggcgcaaccagggc
gtattgcccatgctgcggcgcttgctgcacgactttcagttgccgcaaaccttgatcgca
cgcaccgacggcgaacgcgtgctgaccaacctgctgcacctgtccgaattgctgcaacaa
gccgctgccgaactggatggcgagcaggcgttgattcggcatctgggcgagcatctggcg
ctgtccggtcaggccggtgaagaacagatcctgcgtctggaaagcgatgagcaactggtc
aaagtggtgaccatccacaaatccaagggccttcaatatccgctggtgttcctgccgttc
atttgttcgagcaagccggtggatggcagccgtctgccgttgcacttccacgacgaaaac
cgcaaggcgcaagtcagcctcaagcccaccgccgcattgatcgagcagtccgataacgag
cgtctcgctgaagacctgcggctgctctacgtcgccctgacccgcgccgaatacgcctgc
tggatgggcgttgcggacctcaagcgcggtaacgccagcagctccatgctgcatcgctcg
gcgctgggttatttgctaggtggcggtatgccgttgacggagtcggcgggcctcagttcc
tggctgcgcgacctaagtgaaggttgcaatggcgtgagtgtggaagctgtgccagagcca
accgctgaaaccttcagcccgccgcgcaacgaagcgaccttgctcaaaccgctcaacccc
aaacgtcgggctgcggagaactggtggattgcgtcctacagcgcactgcgcattggcgac
accattaccaccggtggtgacgaatcccccgacagcccgcaagcgcaaaagctgtttgac
gacgagcgccttgaccccgaagcgccacgggaagtgctggtcagtggcggcgatattcac
cgctttccgcgtgggcctaatcccggcaccttcctgcacggtttgctggagtgggccggc
aacgagggcttctcggccgtcgcggacaaaccggatgtactcgaaaaacaggtcggcccg
cgttgcaaccgtcgcggctggacgggctggatcggtacgctgactgcctggctgcagcaa
gtattgacgatgccgctgtccctggccgacgacacccagtcagtcgcgctgggcgaaatg
gaccagcccaaccaataccgtatcgagatggaattctggttcgcctgccacaaagtcgac
gtcgcgcagatggacgctctggtgcgccgctacacccacgacaacgccccgcgcgcagca
acggaaaccgtctcgctcaatggcatgttcaagggcttcatcgacctgactttcgagcac
gaaggccggtattacgtggcggactacaaatccaactggctcgggccggacgatgaaagc
tacacccaggacgctatgaccagcgcgattctcgacaatcgctatgacctgcaatacgtg
ctgtacctgctcgcgttgcatcgccagctcaaagcgcggctcgccgattacgattacgac
caacacatgggcggcgcgctgtacatcttcctgcgcggtgcgtacgccagcacccagggc
gcgtacttcacccggccgccacgggaactgatcgaaggtctggatctactcttccagggt
aagtcagtgacgcaagaattcgtcctcaccggagagcccgcatga
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