Paucimonas lemoignei: NCTC10937_05227
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Entry
NCTC10937_05227 CDS
T05492
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03420
Nucleotide excision repair
plg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10937_05227 (uvrD)
03430 Mismatch repair
NCTC10937_05227 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_05227 (uvrD)
Enzymes [BR:
plg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10937_05227 (uvrD)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10937_05227 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NCTC10937_05227 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SQG01006
LinkDB
All DBs
Position
1:5853768..5855951
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AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAASVGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSIL
SVTFTNKAAAEMRHRIEQLMGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QARLVKRVIRELGLDEQRWPVKQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSIYEAYE
VACQRAGVIDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDTEVIRLEQNYRSTASILKAANGLII
NNSGRMGKELWTDVGDGELINLYAAFNEHDEARYVVETIESALKTGLARSEIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIRQHARHADVSMWEATRQLIANKGLTGRAAGALGGFVELIENLAAKVMEMPLH
LMTQTVIEQSGLINYHKEEKGEKGQARVENLEELVSAARNFENNEEDAELTPLAAFLGHA
SLEAGDTQAEEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQQLVMTYAETRRLYGSETYNKVSRFVREIPPLLIQEVRLSNSVSRPFGGTQ
KVSTSSLFNGTGIPETAFSLGQQVRHAVFGDGVILNFEGAGAQARVQVNFAEGSKWLMMG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgcttaattccctcaacgatgcccaacgtcaggccgta
gctgcctccgtgggtcgtcagttggtcctggccggcgctggttccggcaaaacccgtgtg
ctggtgcatcgcatcgcctggttgatccaggtcgagcaagcctcgccgcattcgatcctg
tcggtgacgttcaccaacaaggcggcggcagaaatgcgccaccggatcgaacagctgatg
ggtatcaacccggccggcatgtgggttggcaccttccacggcctggcgcaccgcctgttg
cgggcgcactggcaggaagccggcctttcgcagacgttccagatcctggacagcgatgat
caggcacgcctggtcaaacgggtgatccgcgagctgggcctggatgagcagcgctggccg
gtcaagcaggctcagtggttcatcaatggccagaaagacgaaggcctgcgccccaaacat
attcaggccagcggcgacctgttcctgaccaccatgaagtctatctacgaagcctatgaa
gtggcctgccagcgcgcaggcgtcatcgacttctccgagctgctgctgcgtgctctggac
ctgtggcgcgataatcctggcttgctcgcccactatcagcgccgcttccgccacgtgctg
gtggacgaattccaggacaccaacgccgtgcagtacgcctggttgcgtctgctggctcag
ggtggtgacagcctgatggtggtcggcgacgacgatcagtcgatttacggctggcgcggg
gcgaagatcgagaacattcatcagtattcgtcggacttcccggacaccgaagtgattcgt
ctggagcagaactaccgctccaccgccagcatcctcaaggcggcaaacggcctgatcatc
aataacagcggccgcatgggcaaagagctgtggaccgatgtgggcgatggcgagctgatc
aatctctacgccgcgttcaatgagcacgacgaagcccgctacgtggtggaaaccatcgaa
agcgcgctcaagaccggcctggcgcgcagtgagatcgccattctctaccgctccaacgcc
caatcccgggtgcttgaagaagccttgctgcgcgagcgcattccgtatcgcatctatggc
ggccagcgattcttcgagcgcgccgaaatcaagaacgccatggcctacctgcgcttgctc
gaaggccgtggcaacgatgccgcactggaacgggtgatcaacgtcccggcccgtggcatt
ggcgaaaagaccgtcgaagcgattcgtcagcatgcacgccatgccgatgtgtcgatgtgg
gaagccactcgccagctgatcgccaataaaggcctgaccggccgtgccgcaggcgcactg
ggcggttttgtcgagctgatcgaaaatctggcggccaaggtcatggagatgccgctgcat
ctgatgacccagaccgtgatcgagcaatcggggctgatcaactaccacaaggaagagaaa
ggcgaaaaaggccaggctcgggtagaaaaccttgaggaactggtcagcgccgcgcgcaac
ttcgaaaacaacgaagaagacgccgagctgaccccgctggccgccttcctgggccatgcg
tcactggaagcgggcgacacccaggccgaagagcacgaagacagcattcagctgatgacg
ctgcacagcgccaaaggcctggaattcccttacgtgttcctggtgggcatggaagaaggc
ctgttcccgcacaagatgagcctcgaagaacctggccgtcttgaagaggaacggcgcctg
gcttatgtcggtattacccgcgccatgcagcaactggtgatgacctacgccgagacccga
cgcctgtatggcagcgaaacctacaacaaggtgtcgcgtttcgtacgcgagattccgcca
ttgctgattcaggaagtgcgcttgtccaacagcgtcagccgaccgtttggcggcacgcag
aaggtcagcaccagcagcctgttcaatggcaccggcattccggaaaccgctttcagcctc
gggcaacaggtcaggcatgcggtgtttggcgacggcgtgatcctcaacttcgaaggcgcc
ggcgctcaggcacgggtgcaggtcaattttgccgaaggcagcaagtggctgatgatgggc
tacgcgaagctggaagcgatttga
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