Planctomyces sp. SH-PL62: VT85_01245
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Entry
VT85_01245 CDS
T04401
Symbol
sigA_1
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VT85_01245 (sigA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plh03021
]
VT85_01245 (sigA_1)
Transcription machinery [BR:
plh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VT85_01245 (sigA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DUF722
Motif
Other DBs
NCBI-ProteinID:
AMV36039
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All DBs
Position
307444..309117
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AA seq
557 aa
AA seq
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MDKLDEGLKALLELGKRRGFLTFDQVNDVLPDDATSPDRIHGLLETLDEMGVELINEDEA
EARLLASGDLDDESEDLAEAEEEEEEDAELTPEELEDISRRIDDPVRMYLTQMGEIPLLT
RDQEINLAKKIEVTRKKFRRKVLECHFALALVVDVLKKVSDGELPFDRTVKVSVTENLEK
DQILGRMPHNLATLSHLMECNVRDFKAFIRDREPTSRAGLVNDLKRRRFKAVNLVEELSI
RTQKVQPLMKRLEQIAVRMNELLFQLREYRAGRVGKEDRANLVKELKDLMRITLESPKSL
RRRVAVMNSRFKEYEQAKRELSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDK
YEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETMSKLRNVSKKLLQEKGREP
TIEETAKAANISVEETRRVMKISRHPISLDRPVGESEDSYFGDFIEDEAVESPINAATQE
MLKDKIDQVLKTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKL
QHPVRSRQLEGFLESTG
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggataagctggacgagggcctcaaagctctcctcgaactgggtaagcgacgtggtttc
ctgacgttcgatcaggtcaacgacgtccttcccgacgacgcgacgagccccgatcgcatc
cacggcctgctcgagacgctcgacgagatgggggtcgagctgatcaacgaggatgaggcc
gaggcccgcctgctggcgtccggcgacctcgacgacgagtccgaggacctcgccgaggcc
gaggaggaggaggaagaagacgccgagctcacgcccgaggagctggaggacatctcccgg
cggatcgacgacccggtccggatgtacctcacccagatgggcgagatccccctgctcacc
cgcgaccaggagatcaacctcgccaagaagatcgaggtcacccgcaagaagttccgccgc
aaggtcctggagtgtcacttcgccctggcgctggtggtcgacgtcctcaagaaggtctcc
gacggcgagctgccgttcgaccgcaccgtcaaggtctcggtcaccgagaacctcgagaag
gaccagatcctcggccggatgccccacaacctcgcgacgctctcccacctgatggagtgc
aacgtccgcgacttcaaggcgttcatccgcgaccgcgagccgacctcccgcgccggcctc
gtcaacgacctcaagcgccgccgcttcaaggcggtcaacctggtcgaggaactctcgatc
cggacccagaaggtccagcccttgatgaagcggctggagcagatcgccgtccgcatgaac
gagctcttgttccagctccgcgagtaccgcgccggccgggtcggcaaggaagaccgcgcc
aacctggtcaaggagctcaaggacctgatgcggatcacgctggagagccccaagagcctc
cgccgccgcgtcgccgtcatgaactcccggttcaaggagtatgagcaggccaagcgcgag
ctctccggcggcaacctccggctcgtcgtctccatcgccaagaagtaccgcaaccgcggc
ctctcgttcctggacctgatccaggaggggaacaccgggctgatgcgggccgtcgacaag
tacgagtatcgccgcggctacaagttcagcacctacgccacgtggtggatccgccaggcc
atcacccgcgccatcgccgaccaggcccggacgatccgcatcccggtccacatgatcgag
acgatgtccaagctccgcaacgtctccaagaaactcctccaggagaagggccgcgagccg
accatcgaggagaccgccaaggccgccaacatctccgtcgaggagacgcggcgggtcatg
aagatcagccgacacccgatctcgctcgaccgccccgtcggcgagagcgaggacagctac
ttcggcgacttcatcgaagacgaggccgtcgagagcccgatcaacgccgccacccaggag
atgctcaaggacaagatcgaccaggtcctgaagaccctcacctaccgcgagcgcgagatc
atcaagctccgctacggcctgggcgacggctacacctacaccctcgaggaggtcggccgg
atcttcaaggtcacccgtgaacgggtgcggcagatcgaggccaaggccgtccgcaagtta
cagcatccggtccgaagccggcagctcgagggcttcctcgagagcaccggttaa
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