Planctomyces sp. SH-PL62: VT85_03080
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Entry
VT85_03080 CDS
T04401
Symbol
sigA_2
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VT85_03080 (sigA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plh03021
]
VT85_03080 (sigA_2)
Transcription machinery [BR:
plh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VT85_03080 (sigA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
HTH_23
HTH_29
HTH_17
HTH_28
MerR
HTH_31
MerR_1
HTH_Tnp_1
HTH_11
HTH_36
Mor
HTH_Tnp_ISL3
DUF6800
AbiEi_4
Sigma70_ECF
TPR_IF140_C
Motif
Other DBs
NCBI-ProteinID:
AMV36393
LinkDB
All DBs
Position
796638..798317
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AA seq
559 aa
AA seq
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MGRMYCHPAMKQLKDQQTRYAPRERRLEQVERAEQLLGEIEQTKRYPYDYLCFRITGFRP
DNGSVLMLEGDEARRDLRQFVEDLSATIRQPVEQAAEPVLTVDEVSKRFNVSTRTVTRWR
RQGLVARRFVIDGRAKVGFLESSLQRFVAEHRGQVERGSKFRQLTDAERDEIIRRARRMS
QFRSGEVGLIEVARRIARKMARSTETVRLTLKAYDREHPDRAIFGPSTTPLDDDMKAKIY
LRHRMGVSAENLAVESGRTRSSIYRIINEVRAKRILETKLEFIGNDTFAEPKAKAVILAP
LPAPADGKAPRRPKAPKGLPPYLASLYEVPLLDREQEAHLFRQMNYLKSEAVKLREKLDP
AKAKTAALDKIDALQEQALAVKNQIIRANLRLVVSIAKRHVGPSNNFFELVSDGNMSLIR
AVEKFDYARGNKFSTYASWAIMKNYARTIPEENYRRDRFVTGHEEMFEAAADNRIDEHEY
ESALKRMQEAIRGMLDRLDDREKLIITSRFGLGGTSERTLEQLGRELGITKERVRQIESR
GVDKLRRIAGEQKLDLPML
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggacgaatgtactgccaccccgcgatgaagcaactcaaggaccagcaaacgcgatac
gctccccgagagcggcggctcgaacaagttgaacgggccgagcaactcctgggcgagatc
gagcagaccaaacgctacccctacgactacctctgcttccgcatcaccggcttccggccc
gacaacgggtcggtcctgatgctggagggggacgaggcgcgacgcgacctccggcagttt
gtggaggatctctcggcgacgatccggcaaccggtcgagcaggcggccgaaccggtgcta
accgtcgacgaggtgagcaagagattcaacgtctccacgcggacggtgacgcgctggcga
cgacagggcctggtggcacgtcgcttcgtgatcgacgggcgggccaaagtcggatttctg
gaatccagccttcaacggttcgtggccgagcatcgcggccaggtggaacgtggctcgaaa
tttcggcaactgaccgacgcggaacgcgatgaaatcatccgccgcgcccgtcgcatgtcg
caatttcggtcgggcgaggtcggcctgatcgaagtcgcgcggaggatcgctaggaaaatg
gcacgctcgaccgagacggtgagactaaccctcaaggcgtacgatcgcgaacatccggat
cgggcgatcttcggcccctccacgacgccgctcgacgacgacatgaaggccaagatctat
cttcgacaccgcatgggcgtctccgccgagaacctggcggtcgagtccggccgcacgcga
tccagcatctatcgcatcatcaacgaggtccgcgcaaagcggatcctcgagaccaaactc
gaattcatcggcaacgacacgttcgcggagcccaaggccaaggccgtgatcctggccccc
ctccccgcgcccgcggacggtaaggccccgcgccggcccaaagcccccaagggactgccg
ccttacctcgccagcctgtacgaagtgccgctcctggaccgcgaacaggaagcccatttg
ttccgccagatgaactatctgaagagcgaagccgtcaagctccgcgagaagctcgacccg
gccaaggccaaaaccgccgcccttgataagatcgacgccctccaggaacaggccctggcc
gtcaagaaccagatcattcgcgccaacctgcggctcgtcgtctcgatcgccaagcgacac
gtcggaccttcgaacaacttcttcgagctggtctccgacggcaatatgagcctcatccgc
gccgtcgaaaagttcgactacgcccgaggcaacaaattcagcacctacgcctcgtgggcg
atcatgaagaactacgcccggaccatccccgaagagaattaccgccgtgatcggttcgtc
accggccacgaggagatgttcgaagccgccgccgacaaccgaatcgacgagcacgaatac
gaaagcgccctgaagcgcatgcaagaggcgatccgaggcatgctcgaccgactggacgat
cgcgagaagctgatcatcaccagtcggttcggactcggcggcacttccgagcggaccctg
gaacagctcggccgcgaactcggcatcaccaaggaacgcgtccgccagatcgaatcccga
ggcgtcgacaagctccgccgaatcgccggcgaacagaaactcgacctcccgatgctctga
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