Planctomyces sp. SH-PL62: VT85_07420
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Entry
VT85_07420 CDS
T04401
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh02020
Two-component system
plh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VT85_07420 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VT85_07420 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plh03021
]
VT85_07420 (rpoN)
Transcription machinery [BR:
plh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VT85_07420 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
LacI
HTH_23
HTH_Tnp_ISL3
MarR
Motif
Other DBs
NCBI-ProteinID:
AMV37245
LinkDB
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Position
1935514..1936968
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AA seq
484 aa
AA seq
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MRLDTSQQMRTEMRLRMAPRMIQSMEILQLPIMALQERIEQELSENPVLVDLRESASPSE
EGEETAGPAVAEPAEAEPNEFDSLINLDENWSEIYDEGPRRSRASLSEEGDRKLDAMQNM
ASRPRSFHDSLTEQLGFFDCEALFRELAEYLIYNLDDNGYLPKNVTLHDIARDFGHDVTV
EQVEDALHLVQRLDPPGVGARDLRECLLLQLTPDTPCHDILRTVISHHLDDLQHNRLPTI
EKKTGLAIETIKEALEHLRRLNPRPGSSFSLTENTHYVIPDLIVEPDETGAYDVRLVDEH
TPNLSISHYYQKQLRNKGTDPAAREFIQKRIQSARWLIESIEQRRNTLLKVARAIIEHQK
AFLDKGPEFIEPLKMQQIADRVGVHVTTVSRAVDDKWVQSPRGIFPLKRFFGGGTVTADG
EEIAWDTIKQKLLEVVAKEDKSSPMSDEEIVDEMGRHGLKVARRTVTKYRQALMIPSSRQ
RKQF
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttgatacctcccagcagatgcggactgagatgcgcctccgcatggcgcctcga
atgatccagtcgatggaaatcctccagttgccgatcatggcgttgcaggagcggatcgag
caggagctgagcgagaacccggtcctggtggacctccgcgagtcggcctccccttcggaa
gagggcgaggagactgcgggaccggccgtcgccgagccggcggaggccgagcccaacgag
ttcgacagcctcatcaatctcgatgagaactggagcgagatctacgacgagggcccgcgt
cgcagccgcgcgtcgctgagcgaagagggagaccgcaaactcgacgcgatgcagaacatg
gcgtcgcgcccccgctcgttccacgacagcctgaccgaacagctgggattcttcgactgc
gaggccctgtttcgggaactagccgagtacctgatttacaatctggacgacaacggctac
ctgcccaagaacgtcaccctgcacgacatcgcccgcgacttcggccacgacgtcaccgtc
gaacaggtcgaggacgcgctgcatctggtgcaacgtctcgatcctccgggggtcggcgcc
cgggacctgagggaatgcctgctccttcagctgacgcccgacaccccttgccacgacatc
ctccggacggtgatctcacaccacctggacgacctccagcacaaccgcctccccacgatc
gagaagaagacgggcctggcgatcgagacgatcaaggaggccctcgagcaccttcggcgg
ctgaaccccaggccgggctcctcgttcagcctgaccgagaacacccactacgtcatcccg
gacctgatcgtcgagcccgacgagacgggcgcctacgacgttcgcctggtggacgagcac
acccccaacctctcgatctcgcactactaccagaagcagctccgcaacaaggggaccgat
ccggccgcccgcgagttcatccagaagcggatccagtcggcccggtggctcatcgagtcg
atcgaacagcgccggaacactttgctcaaggtggccagggccatcatcgagcaccagaag
gcgttcctcgacaaggggcccgagttcatcgagccgctcaagatgcagcagatcgccgac
cgcgtgggcgtccacgtcacgacggtgagccgggcggtcgacgacaagtgggtgcagtcc
ccccggggcatcttccccctgaagcgattcttcggcggcggcaccgtaacggccgacggc
gaggagatcgcctgggacacgatcaagcagaagctgctcgaggtggtcgccaaggaagac
aagtcgagcccgatgtcggacgaggagatcgtcgacgagatgggccgtcacggtctcaag
gtggcgcggcgcaccgtcaccaagtaccgccaggccctcatgatcccctcaagccgccag
cgcaagcagttctaa
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