Planctomyces sp. SH-PL62: VT85_07480
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Entry
VT85_07480 CDS
T04401
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT85_07480 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plh03019
]
VT85_07480 (recQ_1)
03400 DNA repair and recombination proteins [BR:
plh03400
]
VT85_07480 (recQ_1)
Enzymes [BR:
plh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VT85_07480 (recQ_1)
Messenger RNA biogenesis [BR:
plh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VT85_07480 (recQ_1)
DNA repair and recombination proteins [BR:
plh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VT85_07480 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
MarR_2
AbiEi_4
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMV37257
UniProt:
A0A142YDK0
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All DBs
Position
1950583..1952667
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AA seq
694 aa
AA seq
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MGLVGGPVDLELSLRERFGLRDFRPGQREVIESVLAGRDVLCVMPTGGGKSLCYQLPAVV
TPGLTLVVSPLIALMKDQVDALTARGVRATLLNSTIDPAAQRQRMEEIEAGLYDMVYVAP
ERFRSGRFTAMLQRVPPALLAIDEAHCISQWGHDFRPDYARLGEARRRIGSPPCIALTAT
ATDVVQRDVAEQLGLIDPRLFVTGFDRPNLRYVVARTGRDEAKLEELSRTLERFPGPSVI
YASSRARCESVAGYVAKELRREVVVYHAGLDREARSKAQDDFMSGDADVVVATNAFGMGV
DKPDIRSVIHFNMPGTIEAYYQEAGRAGRDGGASVCVLLYSAGDRRLQELFIENEFPPKP
VVHQIYDFLRSLDDDPIELTLTQILERSGVDVKESGVGAALKILDDAGAIEKFSPRENMA
IVRFNLEAEEAEGSLVDRVSAQAPVKRAVLAGLEAMARGRVGEPCYFRPDELAAALGLDR
AALNRAVKGLTAELPIDYIPPFRGNALRVIDRDRKPRDLDIDFRKLDVRKRHEYEKLDRM
TQYAMSPICRRSLILSYFGEKANLSEPCGGCDNCRSDDGGGGVAVTVVDSPEARETIQKI
LSGVARAKGRFGKTSVAQMLAGSDSERMARSGLQALSTFGILRQSGLTHREIADLIDALG
GVGLIESQAVADFKPVVSLSEAGWAWLRDREAPP
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcgtcggtgggccggtcgatctggaactctcccttcgtgagcggttcgggctg
cgggatttccgtcccggacagcgcgaggtcatcgagtcggtcctcgcgggccgggacgtc
ctctgcgtgatgccgacgggcggcggcaagagcctctgctaccagctcccggccgtcgtg
actcccggcctcacgctggtcgtcagcccgctcatcgccttgatgaaggatcaggtcgac
gccctcaccgcgcgcggggtgcgcgccaccctcctgaactccaccatcgacccggccgcc
caacggcagcggatggaggagatcgaggccgggctctacgacatggtgtacgtcgccccc
gagcggttccgcagcggccgcttcacggcgatgctccaacgggtccccccggccctgctc
gcgatcgacgaggcccactgcatcagccagtgggggcacgacttccggcccgactacgcg
cgcctgggggaggcccgacggcggatcggctcgcctccttgcatcgcgctcacggccacg
gccaccgacgtcgtccagcgcgacgtggccgagcagctcggcctgatcgacccgcgactc
ttcgtcaccgggttcgaccgtcccaacctccgctacgtggtggcccggaccggccgcgac
gaggccaagctcgaggagctgagccgcaccctggagcggttccccggcccctcggtgatc
tacgcctccagccgggcccgttgcgaatcggtggcgggctacgtcgccaaggagctgcgc
cgggaggtcgtcgtctaccacgccgggctggatcgcgaggcccggtcgaaggcccaggac
gatttcatgagcggcgacgccgacgtggtggtcgccaccaacgcgttcggcatgggggtc
gacaagcccgacatccgctcggtcatccacttcaacatgccgggcacgatcgaggcttat
taccaggaggccggtcgcgccggccgcgacggcggggcctcggtctgcgtgctgctctac
tcggccggcgaccggcggctccaggagctgttcatcgagaacgagttcccccccaagccg
gtcgtccaccagatctacgacttcctgcggtcgctcgacgacgacccgatcgagctgacc
ctgacccagatcctggagcgatcgggcgtggacgtgaaggagtccggggtgggcgccgcg
ctcaagatcctggacgacgccggggcgatcgaaaagttctcgccgcgtgaaaacatggcg
atcgtccgcttcaatctcgaggccgaggaggccgaggggagcctggtggaccgcgtcagc
gcgcaggcgccggtgaagcgggcggtcctggcggggctggaggcgatggcgaggggccgc
gtgggcgagccctgctacttccgccccgacgagctggccgccgcgttgggcctcgaccgt
gcggccctcaaccgggccgtcaaggggctgacggccgagttgccgatcgactatatcccg
ccgttccggggcaacgccctgcgggtgatcgaccgcgaccgcaagccgcgcgacctggat
atcgacttccgcaagctggacgtccgcaagcggcacgagtacgagaagctcgaccgcatg
acccagtacgcgatgagcccgatctgccgacggtcgctgatcctcagctacttcggcgag
aaggccaacctctcggagccctgcggcgggtgcgacaactgccggtccgacgacggcggc
gggggagtggccgtcaccgtcgtcgactctcccgaagctcgtgagaccatccagaagatc
ctctcgggagtcgcccgcgccaagggtcggttcggcaagacgtccgtcgcccagatgctc
gccgggtcggactccgagcggatggcccggagcggcctgcaagccctgagcaccttcggc
atcctccgccagagcggcctgacccatcgcgagatcgccgacctgatcgacgcgctgggg
ggggtcggattgatcgagagccaggccgtcgccgacttcaagcccgtggtctcgctcagc
gaggccggctgggcctggctccgcgaccgcgaggcccccccctga
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