Planctomyces sp. SH-PL62: VT85_08960
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Entry
VT85_08960 CDS
T04401
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plh
Planctomyces sp. SH-PL62
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plh03016
]
VT85_08960 (rtcB)
Enzymes [BR:
plh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VT85_08960 (rtcB)
Transfer RNA biogenesis [BR:
plh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VT85_08960 (rtcB)
Prokaryotic type
tRNA splicing ligases
VT85_08960 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AMV37553
LinkDB
All DBs
Position
2324409..2325875
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AA seq
488 aa
AA seq
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MAKVGYTGPLEQVSPFQYRIPKSYRDDMRVDGVIFADEHLIDHIKADQGPEQVVNVATLP
GIQKASLAMPDIHWGYGFCIGGVAATDPEQGGVISPGGVGYDINCGVRLLRTDLEWADVK
DRIRSLVEQLFRDIPTGVGQRGVFSFTKPQLVQLMEEGVSYVVNKGWGTDRDIEFAEAQG
RLDGADPGRVSDRAIQRGADQCGTLGSGNHFLEVQVVDRVLDEAAAKVMGLREGQVTVLI
HSGSRGLGYQVCDDYLGVFKDAPAKYGFTLPDRQLACAPVRSPEGQSYLGAMRAAANYAW
CNRQLLTHQARQVFARVFEKPWEELGMDLVYDVAHNIAKFEEHDVGGGVRKQVCVHRKGA
TRAFPPGHPEIPELYAETGQPVIIPGSMGTASWVLAGQPGSMLHSFGSSCHGAGRMMSRT
AAVRLAEGRRIDRELDAIGIIARARGHKGLAEEQPAAYKDVDLVVDVVDKADISKKVARL
RPVGVIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggtcggttacacggggccgctggagcaggtctcgccgttccagtaccggatc
ccgaaatcctatcgcgacgatatgcgggtcgacggcgtcatcttcgccgacgagcacctc
atcgaccacatcaaggccgaccaggggccggagcaggtcgtgaacgtcgccacgctgccg
ggcatccagaaggccagcctggcgatgcccgacatccactggggatacggcttctgcatc
ggcggcgtcgccgcgaccgacccggagcaggggggcgtgatctcccccggcggcgtcggc
tatgacatcaattgcggcgtccgcctcctgcgcaccgacctggaatgggccgacgtcaag
gaccggatccgatcgctcgtggagcagctcttccgcgacatccccaccggcgtcggccag
cgcggggtcttctcgttcaccaagccgcagctcgtgcagctgatggaggagggggtctcg
tacgtcgtgaacaagggttgggggaccgaccgcgacatcgagttcgccgaggcccagggg
aggctcgacggcgccgaccccggccgcgtcagcgaccgcgccatccagcgcggggccgac
cagtgcgggacgctcggctccggcaaccacttcctggaggtccaggtcgtcgaccgggtc
ctcgacgaggccgccgcgaaggtcatgggcctgcgcgaaggccaggtcacggtcctgatc
cattcgggctcgcgcgggctgggttatcaggtctgcgacgactaccttggcgtcttcaag
gacgcccccgcgaagtacggcttcacgcttcccgaccgacagctcgcctgcgcgccggtg
cggagccccgaaggccagtcgtacctgggcgcgatgcgcgccgcggccaactacgcctgg
tgcaaccgccagttgctcacccaccaggcacgccaggtcttcgcccgggtcttcgagaag
ccctgggaggagctggggatggacctggtgtacgacgtggcgcacaacatcgccaagttc
gaggagcacgacgtgggcggcggggtccgcaagcaggtctgcgtccaccgcaagggggcc
acgcgggccttcccgccgggccatcccgagatccccgagctgtacgccgagaccggccag
cccgtcatcatccccggcagcatggggacggcgagctgggtcctcgccggccagcccggg
agcatgctccattcgttcgggtcgagctgtcacggggccggccggatgatgagccgcacc
gccgccgtccgactggccgaaggccgccgcatcgaccgcgaactcgacgccatcggcatc
atcgccagggcgaggggccacaagggactcgccgaggaacagcccgccgcctacaaggac
gtcgacctcgtcgtcgacgtcgtcgacaaggccgacatctccaagaaggtcgcccgactc
cgcccggtgggggtcatcaaggggtga
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