Planctomyces sp. SH-PL62: VT85_12820
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Entry
VT85_12820 CDS
T04401
Symbol
addB
Name
(GenBank) ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
plh
Planctomyces sp. SH-PL62
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plh03400
]
VT85_12820 (addB)
Enzymes [BR:
plh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VT85_12820 (addB)
DNA repair and recombination proteins [BR:
plh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
VT85_12820 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AMV38316
UniProt:
A0A142YGG0
LinkDB
All DBs
Position
complement(3278460..3281609)
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AA seq
1049 aa
AA seq
DB search
MPTPLCRDQTIRELALHPSKSTWLAEPRVRCWADLWRWVASIVRKGPTLLSDSAATAVLD
EALRDETAGGRRGPLAELTSRVGYRRRLRRRVRDWTVAERHRERDDERPEPEDDGDDAIR
AAEVSVFRRYRRLLTDLDAEDEAGLSVWASLRLRDRNARAGSGEGDHLVFLDFEGKSPAQ
WRILRDILERPRSVDVTLCHQDAPERAELYLATAPIRARLLDLGMVESLVPSDSHRPAGL
RAVDALLFAASAPKIETGEGLSIRGGPAGMDLGRMVAREVKDLIGRGVEPDEILIAFPRW
DDQAESACLALRRAGLPVHDAGPRTLDVDPSVAATLQAARIPVEEWEAEQLVRFLRNGQL
QPSWGEDVDRLALAEAASTLHESSVFRGDRQILQALERAIARNEDAPDPIERDRRRRKVE
RARRAHPIIKRVIDVLAPLDRPRPWSEHAIELRRAATELGLGSRDGRALETLWDALEDRA
EILERLGRDAVVVPWAEFVDVLTDVTAEVQAPRPTAPDGSIRTTLVDDLGGCRAGRVLLV
GLVEGSFPRRPAVERFLELKPGEEPSPAGRAAYAAETLRFLRALGAAERGAHLFYPTTDA
KGQPLLRAGFLDDLLGAMSAPAESACHVAHARFHPALLDREDLAVAPGDARVLAAALAAE
RGRTARLRDLAADPGHRAPLEGAAAALQALDRRRRGAPFGEFEGLLTDPEAHSRLARDFD
GLTHTFSPSQLETYLNCPFQFFSRHVLHLDPIAERDELDEDATERGSRLHDILEEFERRR
AETDADTPDERLLAAAVDKVLAKELDELSELDLGLREIELGQVQRITAQYAQQRAEYTSQ
TPTAPAPRMFEFGFGEPGTDHPEFELTLGAEVVRLKGRIDRIDMVDAGAESGPPRYRIID
YKSGNPPSSKDVTEGRMLQLPLYAMAVERLLYQRGEAELLDVGYWGLKDKGYRPIVFAQW
QDVREALIERVFAIIHRLRDGAFQVAPRKEGCEAYCEYRGVCRIRQVRAAGKTIEPDAQP
TASADKTLGGRPARASKSAKSTEPKAERS
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
gtgccgacgcccctctgccgtgaccagacgatccgcgaactggcgttgcatccctcgaag
tcgacctggctcgccgagccccgcgtgcggtgctgggccgacctctggcgctgggtcgcc
tcgatcgtccggaaggggccgacgctgctgtcggactcggccgcgaccgccgtcctcgac
gaggccctgcgcgacgagaccgccggcggccgtcgcggaccgctcgccgagctgacctcg
cgggtcggctaccgccgccgcctccgacgccgcgtccgcgactggacggtcgccgaacgc
catcgcgagcgggacgacgaacgcccggaaccggaagacgacggggacgacgcgatccgg
gccgccgaggtctcggtcttccggcgctaccgtcggctcctgaccgacctcgacgccgag
gacgaggccgggctttcggtctgggcctccttgcggctccgagaccgaaacgcgcgggcg
ggctccggcgagggcgaccacctcgtcttcctggacttcgaggggaagtcgccggcgcag
tggcggatcctccgcgacatcctggagcgcccccggtcggtcgacgtcaccctctgccac
caggacgcccccgaacgcgccgagctgtacctggcgaccgccccgatccgagcccggctg
ctggacctggggatggtcgaatcgctcgtcccttccgactcccatcggccggcggggctg
cgggcggtcgacgcgctcctgttcgccgcgtcggccccgaagatcgagaccggcgagggg
ctgtcgatccggggcggcccggccgggatggacctgggccgaatggtcgcgcgcgaggtc
aaggacctgatcggccgcggcgtcgaaccggacgagatcctgatcgccttcccccgctgg
gacgatcaggcggaatcggcctgcctcgccctccggcgggcgggcctgccggtccacgac
gccgggccgaggaccctggacgtcgacccgtccgtcgcggcgaccctccaggcggcgcgg
atcccggtggaagagtgggaggccgagcagctcgtccggtttctccgcaacggccagttg
cagccgagctggggcgaggacgtcgaccgcctggccctcgccgaagccgcctccacgctc
cacgagtcgtccgtcttccggggggaccgccagatcctccaggccctcgaacgcgcgatc
gcccgcaacgaggacgcgcccgacccgatcgaacgcgaccgccgcaggcgcaaggtcgag
cgggcgcggcgggcgcaccccatcatcaagcgggtgatcgacgtcctggccccgctggac
cgtccccgcccctggagcgagcacgcgatcgaacttcgccgcgccgcgacggagctgggc
ctgggctcgcgcgacggccgggcgctggagacgctctgggacgccctggaagaccgcgcc
gagatcctcgaacgcctgggccgagatgcggtcgtcgtcccctgggcggaattcgtggac
gtgctgaccgacgtcaccgccgaggtccaggcgccgaggccgacggccccggacggctcg
atccgcacgaccctggtggacgacctcggcggctgccgcgcgggccgcgtcctcctggtc
ggcctggtcgaggggagcttcccgagacgcccggccgtcgagcgattcctggagctgaag
cccggcgaggagcccagccccgccggccgcgcggcgtatgcggccgagacgctccggttc
ctccgggcgctcggcgcggcggagcgcggggcgcacctgttctatccgacgaccgacgcc
aagggccaacccctgctccgcgcggggttcctcgacgacctgctgggcgcgatgtcggcc
cccgcggagtcggcctgccacgtcgcgcacgcgcggttccaccccgccctgctcgaccgc
gaggacctggccgtcgcgccgggcgacgcccgggtcctggccgcggccctggccgccgag
cgcggccgcacggccaggctccgcgatctggccgccgacccgggccatcgggcgccgctc
gagggggcggcggccgcgctccaggcgctggatcgccgccgccggggggccccgttcggc
gagttcgaggggctgctcaccgatcccgaggcccactcccgcctggcgcgggacttcgac
gggctcacgcacacgttcagccccagccagcttgagacctacctgaactgccccttccag
ttcttcagccggcacgtcctccatctcgatccgatcgccgagcgcgacgagctggacgag
gacgccaccgagcgcggcagccgcctgcacgacatcctcgaggagttcgaacgccgacgc
gccgagaccgacgccgacacccccgacgaacgcctcctggccgccgccgtcgacaaggtg
ctggcgaaagagctggacgagttgagcgagctggacctgggcctccgcgagatcgagctg
ggccaggtgcagcggatcaccgcccagtacgcccagcagcgggccgagtacacctcgcag
acgccgaccgcccccgcgccccggatgttcgagttcggcttcggcgagcccgggaccgac
catcccgaattcgagctgaccctcggcgccgaggtcgtccgcctcaagggccggatcgac
cgcatcgacatggtcgacgccggggccgagtccggaccgccccgctaccggatcatcgac
tacaagagcggcaacccgccgagttccaaggacgtgaccgaaggccggatgctccagctc
ccgctctacgcgatggccgtcgaacggctcctctatcagcgcggagaggccgaactgctg
gacgtcggctactggggcctgaaggataaggggtatcggccgatcgtcttcgcgcagtgg
caagacgtgcgcgaggccctgatcgaacgcgtcttcgcgatcatccaccgtctccgcgac
ggggcgttccaggtcgcgccgaggaaggaaggctgcgaggcctactgcgagtatcggggc
gtctgccgcatccgccaggtccgcgcggccgggaagacgatcgagcccgacgcgcagccc
acggcctcggccgacaagacgctcgggggccgcccggccagggcctcgaagtccgcgaaa
tccacggaaccgaaggcggagcggtcatga
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