Planctomyces sp. SH-PL62: VT85_16410
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Entry
VT85_16410 CDS
T04401
Symbol
sigA_6
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VT85_16410 (sigA_6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plh03021
]
VT85_16410 (sigA_6)
Transcription machinery [BR:
plh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VT85_16410 (sigA_6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r1_2
Sigma70_r3
TBK1_CCD1
PUMA_CC
Motif
Other DBs
NCBI-ProteinID:
AMV39021
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All DBs
Position
complement(4169830..4170687)
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AA seq
285 aa
AA seq
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MVSKNSNRRELGGSPLQIYLTEINATPLLSAEEERELSEKVAAGDPYAREHMVKANLRLV
VNIARGYLGKGLNIEDLIEEGNLGLMRAVEGFDGQMDTRFSTYASYWIKQSIRRAVMNNG
KPIRLPAYMVSLLAKWKRASAILTERMGRQPTIEEVGKALKLSKKKIGIVAKAIRVNSLT
HQLENSEDDKPILDDILTDDRGKAPEDQMIEADDLERVFDRLDALDDREAAVVRMRFGLE
PYDPMTLREVGEQLGLTRERVRQLENQALRKLIHDLEEVVEPAGR
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggtttccaagaactcgaatcgccgcgagctgggcggctcccctctccagatctacctc
acggagatcaacgccacgccgctcctctccgccgaggaagagcgggagctctccgaaaag
gtcgcggccggcgacccttacgcccgcgagcacatggtcaaggccaacctccggctcgtc
gtgaatatcgcccggggctacctgggcaagggtctgaacatcgaggacctcatcgaggaa
ggcaacctcgggctgatgcgcgccgtggaaggcttcgacggccagatggacacccgcttc
agcacctacgccagctactggatcaagcagtcgatccgccgcgccgtgatgaacaacggg
aagccgatccggctcccggcctacatggtgagcctgctggccaaatggaagcgggcctcc
gccatcctgaccgaacgaatgggccgccagcctaccatcgaggaggtcggcaaggcgctc
aagctctcgaagaagaagatcgggatcgtggccaaggccatccgggtcaacagcctcacc
caccagctcgagaactcggaagacgacaagccgatcctcgacgacatcctgaccgacgat
cgcgggaaggccccggaagatcagatgatcgaggccgacgacctggagcgggtcttcgac
cgtctcgacgccctcgacgaccgcgaggccgccgtcgtccgcatgcggttcggcctggag
ccttacgacccgatgaccctgcgcgaggtcggcgagcagctcggcctgacccgcgagcgc
gtccgccagcttgagaaccaggctcttcgcaagctgatccacgatctggaagaggtggtc
gagccggccggtcgctga
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