Planctomyces sp. SH-PL62: VT85_17910
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Entry
VT85_17910 CDS
T04401
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VT85_17910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plh03021
]
VT85_17910
03019 Messenger RNA biogenesis [BR:
plh03019
]
VT85_17910
Transcription machinery [BR:
plh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VT85_17910
Messenger RNA biogenesis [BR:
plh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VT85_17910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ATPase_2
AAA_25
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
AMV39317
UniProt:
A0A142YJD7
LinkDB
All DBs
Position
4559803..4561740
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AA seq
645 aa
AA seq
DB search
MPNETRPRRESSGSSRIRKTAAASPPPASDENAGSASASTPNHSPVSESPAASETYRERP
SREPYREEGPADREPIRFIRSRDRAEPAAERPEREPGMTLRERLARDRAEREAASPPPAH
DGIPLSRDRDRDRDRDREAAPPVRERVREAREPEASGSRERPEREASFNSRDRDYSTSTK
PERSPSPSASPSLGEGAGEAFPDVEDDDVFGDVAIHDRYEDIKRGEIHLTELQKMTMPQL
IKTAKSEGIAEYMGLKKQDLIFKILKERVKQNGLMYGEGTLEVLPDGFGFLRSPDYNYLP
CPDDIYVSPSQIRRFGLKTGAIVSGQIRPPKENERYFALLRVEAINFEDPDKLSEKVGFD
DLTPLHPQGRIRLETTNEEINMRVVDLVTPIGFGQRGVIVAPPRTGKTILLQKIANSVLT
NHPEAYVMVLLIDERPEEVTDMERSVKGPTAEVISSTFDEPASRHIQVAEMVIEKAKRMV
EFGKDVVILLDSITRLARAYNTEAPHSGKILTGGIDASALQKPKRFFGAARKIEEAGSLT
ILATALVDTGSRMDDVIFEEFKGTGNMELHLDRRLVEKRIWPAIDVNKSGTRREELLMDA
DELRRVWILRRVLNDMNPVEAMELLTGRMKKSKTNGEFLSSMNLS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcctaacgagacacgcccccgccgcgagtcctctggaagctcccgcatccgcaagacc
gccgcggcctcccctccgcccgcttcagacgagaacgccggatccgcctccgcctcgact
cccaatcattcgccggtctccgagtcgcccgccgcttccgaaacctaccgcgagcgcccc
tcgcgcgaaccgtatcgcgaggaaggcccggccgaccgcgagccgatccggttcatccga
tcccgcgaccgcgccgaaccggccgccgagcggcccgagcgcgagccggggatgaccctt
cgcgagcgcctcgcccgcgaccgcgccgaacgcgaggccgcctcgccgccccccgcgcac
gacggcatcccgctctcgcgcgatcgggatcgagatcgcgacagggaccgcgaggccgcc
ccgcccgtccgcgagcgggtccgcgaggctcgcgagcccgaggcgtccggctcccgcgag
cgcccggagcgcgaggcctcgttcaactcccgcgatcgcgactactcgacgtccaccaag
cccgaacgatctccttctccgtcggcctcgccgtccctgggcgaaggcgcgggcgaagcg
ttccccgacgtcgaggacgacgacgtcttcggggatgtggcgatccacgatcgctacgag
gacatcaagcgcggtgagatccatctcaccgagctccagaagatgacgatgcctcagctc
atcaagacggcgaaatccgaagggatcgccgagtacatggggctgaagaagcaggacctc
atcttcaagatcctcaaggagagggtcaagcagaacggcctgatgtacggcgaggggacc
ctggaagtcctgcccgacggcttcggcttcctccgcagcccggactacaactacctgccc
tgccccgacgacatctacgtctcccccagccagatccgccgcttcggtctcaagaccggc
gctatcgtgtcgggccagatccgcccccccaaggagaacgagcggtacttcgcgctcctg
cgggtcgaggcgatcaacttcgaggacccggacaagctcagcgagaaggtcggcttcgac
gacctcacgccgctgcacccccagggccgcatccggctcgagacgaccaacgaagaaatc
aacatgcgggtcgtcgacctcgtcacgccgattggcttcggccagcgcggcgtgatcgtg
gcgccccctcggaccggcaagacgatcctcctccagaagatcgccaacagcgtcctgacg
aaccaccccgaagcctacgtcatggtcctcctgatcgacgaacggccggaggaagtgacc
gacatggagcggtcggtgaaagggccgacggccgaggtcatcagctcgaccttcgacgag
cccgcctcgcgacacatccaggtcgccgagatggtgatcgagaaggccaagcggatggtc
gagttcggcaaggacgtcgtcatcctgctcgactcgatcacccggctcgcccgcgcctac
aacaccgaggcgccccactccggcaagatcctcaccggcggcatcgacgcctcggcgctg
cagaagcccaagcggttcttcggcgccgcccgcaagatcgaggaggccggcagcctgacg
atcctggccaccgccctggtcgacaccggcagccgcatggacgacgtgatcttcgaggag
ttcaaggggaccggcaacatggaactgcacctcgaccgtcgcctggtcgagaagcggatc
tggccggccatcgacgtcaacaagtcgggcacgcggcgcgaggagctcctcatggacgcc
gacgaactccgccgagtctggatcctccgtcgcgtcctcaacgacatgaaccccgtcgag
gccatggagctgctcaccggccggatgaagaagtccaagaccaacggcgagttcctgtcg
agcatgaacctgtcgtaa
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