Planctomyces sp. SH-PL62: VT85_19025
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Entry
VT85_19025 CDS
T04401
Symbol
ihfB
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
plh
Planctomyces sp. SH-PL62
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plh03032
]
VT85_19025 (ihfB)
03036 Chromosome and associated proteins [BR:
plh03036
]
VT85_19025 (ihfB)
03400 DNA repair and recombination proteins [BR:
plh03400
]
VT85_19025 (ihfB)
DNA replication proteins [BR:
plh03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VT85_19025 (ihfB)
Chromosome and associated proteins [BR:
plh03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VT85_19025 (ihfB)
DNA repair and recombination proteins [BR:
plh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VT85_19025 (ihfB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
PpnN_C
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
AMV39537
UniProt:
A0A142YK17
LinkDB
All DBs
Position
complement(4872333..4872812)
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AA seq
159 aa
AA seq
DB search
MGFSLTLIHAANTFETFQLLKRAARAFVEIAAVTKKEIVKKISDDIGLTQLKTKDIVQRT
LDAIIQTLVTEGRIELRNFGVFEVKRRAPRKARNPRTGDKVFVPSKNVVTFKPGKEMEEL
VRKMNPDDLPLLEDAADADVEGNGPVKPVPETQARHSKD
NT seq
480 nt
NT seq
+upstream
nt +downstream
nt
atgggtttttccttgacactaatccatgcggctaatacatttgagacgttccagctcctc
aagcgagccgcccgcgccttcgtggagatcgccgccgtgacgaaaaaagagatcgtgaaa
aaaatctccgatgacatcggactcacgcagctcaagaccaaggacatcgttcaacggacg
ctggacgcgatcatccagaccctggtcaccgaggggcgcatcgagcttcgcaacttcgga
gtcttcgaggtcaagcgacgggcccctcgcaaggcgcggaaccctcggaccggcgacaag
gtcttcgtcccgtccaagaacgtggtgaccttcaagccgggcaaggaaatggaagaattg
gtgcgaaagatgaatccggatgatcttccgctattggaagacgccgccgatgccgatgta
gaaggcaacggacccgtgaagccggttcccgagacccaggcgcgtcactcgaaggactga
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