Planctomyces sp. SH-PL62: VT85_19770
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Entry
VT85_19770 CDS
T04401
Name
(GenBank) Type III restriction enzyme, res subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VT85_19770
09124 Replication and repair
03420 Nucleotide excision repair
VT85_19770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plh03021
]
VT85_19770
03400 DNA repair and recombination proteins [BR:
plh03400
]
VT85_19770
Enzymes [BR:
plh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VT85_19770
Transcription machinery [BR:
plh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VT85_19770
DNA repair and recombination proteins [BR:
plh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VT85_19770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AMV39681
UniProt:
A0A142YKF8
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All DBs
Position
complement(5048521..5050239)
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AA seq
572 aa
AA seq
DB search
MQYNPANPLIVQGDKTILLEVDNPLHAEARDAIAPFAELEKSPEHIHTYRLTPLSLWNAA
AAGMTADGMVGALETYSKFPLPTSLPADLRDMVGRYGRVKLQRIEGALRLIAGDQPLIEE
LARQKGVREYLGERIDPTSFAVDDLDRGVLKQGLIAVGYPAEDLAGYAQGAALAVELREV
AKSGSPFTVRDYQRGAVDTFHAGGDVKGGSGVIVLPCGAGKTIVGIAALAAIKTETLVLT
TSTTSVEQWRREILDKTDLDESQVATYTGESKNIAPVTLATYQIVTYRPKKDGDFPHFGL
FNSRDWGLIIYDEVHLLPAPVFRITADIQARRRLGLTATLVREDHREEDVFSLIGPKKYD
VPWRVLESRGWIAEAQCHEIRLSLPPALRMEYAIAEWRDKFRLASENPVKEDLIEQLLVR
HDHPEDRVLIIGQYIKQLRRIADRFDIPLITGATTNSEREDLYGRFRTGAVRRLVLSKVG
NFAIDLPDANVMIQVSGTFGSRQEEAQRLGRILRPKEEERAACFYSLITRDTREMDFAHH
RQLFLTEQGYSYEILDESELCAQILDESKSAG
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgcagtacaacccggccaacccgctgatcgtccagggggacaagacgatcctcctggag
gtggacaacccgctgcacgccgaggcccgcgacgcgatcgccccgttcgcggaactggaa
aagagccccgagcatatccacacgtatcgcctgaccccgctctcgctctggaacgcagcg
gcggccgggatgaccgcggacggcatggtcggggcgctggagacctactcgaagttcccg
ctgccgacgagtctcccggccgacctccgcgacatggtgggccgctacgggcgggtgaag
ctccagcggatcgagggggcgctccgcctgatcgccggcgaccagcccctgatcgaggag
ctggcgaggcagaagggggttcgcgagtacctgggcgagcggatcgacccgacgagcttc
gccgtcgacgacctggaccgaggcgtcctcaagcaagggctgatcgccgtcggctacccc
gccgaggaccttgcgggctatgcccagggcgccgccctggcggtcgagctgcgcgaggtc
gcgaagtcggggagccccttcacggtccgcgactaccagcgcggagcggtcgacaccttc
cacgccggcggcgacgtcaaggggggctcgggcgtcatcgtcctcccctgcggcgcgggc
aagacgatcgtcggcatcgcggccctggccgccatcaagaccgagaccctcgtcctgacc
accagcacgacctcggtcgagcagtggcggcgggagatcctcgacaagaccgacctcgac
gagtcccaggtcgccacctacaccggcgaatccaagaacatcgcgccggtgaccctggcg
acctaccagatcgtcacctaccgccctaagaaggacggcgacttcccccacttcggactg
ttcaacagccgcgactggggcctgatcatctatgacgaggtccacctgctccccgccccc
gtcttccggatcacggccgacatccaggcccgccgtcggctcggcctgaccgcgaccctc
gtccgggaagaccaccgcgaggaggacgtcttcagcctgatcggccccaagaagtacgac
gtcccctggcgggtcctggagtcccgaggctggatcgccgaggcccagtgccacgagatc
cgtctcagcctcccgccggccctccggatggagtacgcgatcgccgagtggcgcgacaag
ttccgactggccagcgagaaccccgtcaaggaagacctgatcgagcaactgctggtccgc
cacgaccacccggaagaccgcgtgctcatcatcggccagtacatcaagcagctccggcgg
atcgccgatcggttcgacatcccgctgatcaccggagcgacgaccaattcggagcgagag
gacctctacggtcgcttccgcaccggtgcggtccgccgcctggtcctctccaaggtgggc
aacttcgcgatcgacctcccggacgccaacgtgatgatccaggtctccggcaccttcggc
agccgccaggaagaggcccagcggctgggccgcatcctccgacccaaggaagaagaacgc
gccgcctgcttctactcgctgatcacccgcgacacccgcgagatggacttcgcccaccat
cgccagctcttcctcaccgagcaaggctacagctacgagatcctcgacgagtccgaattg
tgcgcccagattctggacgaatccaagtccgcagggtga
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