Planctomyces sp. SH-PL62: VT85_22765
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Entry
VT85_22765 CDS
T04401
Symbol
alkA_2
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
plh
Planctomyces sp. SH-PL62
Pathway
plh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
plh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VT85_22765 (alkA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plh03000
]
VT85_22765 (alkA_2)
03400 DNA repair and recombination proteins [BR:
plh03400
]
VT85_22765 (alkA_2)
Enzymes [BR:
plh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
VT85_22765 (alkA_2)
Transcription factors [BR:
plh03000
]
Prokaryotic type
Helix-turn-helix
AraC family
VT85_22765 (alkA_2)
DNA repair and recombination proteins [BR:
plh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VT85_22765 (alkA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
AMV40271
UniProt:
A0A142YM52
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All DBs
Position
5728673..5730133
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AA seq
486 aa
AA seq
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MELEPDLCHRVLTARDARFDGLFFVGVTSTRIYCRPICPARTPRRDRCRFFPGASAAEQA
GFRPCLRCRPELAPGSAPVDAVGRTARLAASRIGAGAMDEEGGVEALAGEMGVGSRHLRR
VLRQELGVSPVALAQTHRLLLAKQLLTDTAMPIIDVAFASGFSSVRRFNALFLARYRLTP
RDIRRSRGREIAGGEIRLTLAYRPPLAWDSMLRFLGDRAVAGVEAVVGGSYLRTVAIGEA
RGWLKVEPDAARHALRVELPMSLAPALPRVLGRLRDLFDLDARPDVIDDHLGRDARLRGT
VAGLRVPGAFDGFELAARAVLGQQVSVRAATTLAGRFASAFGEPIETPFPQLDRLAPSPA
RVAEAAPGELAALGLVAARAECLGALAKAARDRLVSLEPGPDPVACMERLTEIPGVGPWT
AAYIGMRGLRWPDAFPHADLVLRKALGGRTAREVLEAAEPWRPWRAYAAMRLWNGSGKLE
GREEAR
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgagcccgacctctgccaccgcgtcctgaccgcccgcgacgcccgtttcgac
gggctgttcttcgtgggggtgacgtccacgcggatctactgtcgcccgatctgcccggcg
cggacgcccaggcgggaccgctgccggttcttccccggcgcctccgccgcggagcaggcg
gggtttcgcccttgcctgcgatgccgcccggagctggcgccgggctccgcgccggtggat
gctgtcggccggacggcgcggcttgcggcgagccggatcggcgcgggggcgatggacgaa
gaggggggcgtagaggccctcgccggcgagatgggcgtcggctcacggcacctcaggcgg
gtgctccgccaggaactcggggtctcgccggtcgcgctcgcccagacgcatcgcctgctg
ctcgcgaagcagcttttgaccgatacggcgatgccgatcatcgacgtcgcgttcgccagc
gggttctccagcgtccggcggttcaacgccctgttcctcgcccggtatcggctcaccccg
cgcgacatccgcaggtcgcgaggacgggagatcgccggcggcgagatccggctgacgctc
gcgtaccgtcctccgctcgcctgggattcgatgctccggttcctcggcgatcgggccgtc
gcgggcgtcgaggccgtggtcggcgggtcgtacctgcgcaccgtcgcgatcggcgaggcg
cggggttggctgaaggtcgagcccgacgcggcccgccacgcgctccgggtggagctgccg
atgagcctggcgcccgccctgccccgcgtcctcggccgcctccgcgacctgttcgatctc
gacgcccgccccgacgtgatcgacgaccacctgggccgcgacgctcggctccgcggcacg
gtcgccgggctccgcgtcccgggggcgttcgacggcttcgagctggccgcccgcgcggtg
ctgggccagcaggtttcggtgcgcgcggcgacgacgctcgcggggcggttcgcctcggcc
ttcggcgagccgatcgagaccccgttcccgcaactcgaccgtctcgccccctcgccggcg
cgcgtcgccgaggccgcccccggcgagctggccgccctggggctggtcgcggcccgggcg
gaatgcctgggtgcgttggcgaaggccgcgcgcgacaggctcgtctcgctcgagccgggg
ccggaccccgtcgcctgcatggaacggctgacggagatccctggcgtcggcccgtggacc
gccgcctacatcggcatgcgcggcctgcgctggccggacgccttcccccacgcggacctc
gtgctgcgcaaggccctgggggggcggaccgctcgcgaggtgctggaagcggccgagccg
tggcggccctggcgggcgtacgcggcgatgcgtctttggaacgggtcgggaaaactcgaa
ggacgggaggaggcgcgatga
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