Candidatus Portiera aleyrodidarum AF-CAI: PLF_026
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Entry
PLF_026 CDS
T03738
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pli
Candidatus Portiera aleyrodidarum AF-CAI
Pathway
pli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PLF_026 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pli03021
]
PLF_026 (rho)
03019 Messenger RNA biogenesis [BR:
pli03019
]
PLF_026 (rho)
Transcription machinery [BR:
pli03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PLF_026 (rho)
Messenger RNA biogenesis [BR:
pli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PLF_026 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_22
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CEL12286
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All DBs
Position
I:28389..29648
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AA seq
419 aa
AA seq
DB search
MNLTELKKKNVHELLELAISMNIENLIRYRKQDIIFAILKKHAKGGEDIYGEGVLEILQE
GFGFLRSSDSSYQSGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKDAERYFALLKVNKIN
FDRIETVKKKILFENLTPLFPNYRLLMEIGNGSTEDLTSRILDLVAPIGKGQRGLIVSPP
KAGKTMMMQNIANAIVRNSPECYLIVLLIDERPEEVTEMSRTVRGEVIASTFDEPPTRHV
QLAEMVIEKAKRLVEHKKDVVIMLDSLTRLARAYNTVVPSSGKVLTGGVDSNALEKPKRF
FGVARNIEEGGSLTILASALIDTGSKMDDIIFEEFKGTGNMEAHLDRKLAEKRVFPAINI
RRSGTRREDLLCSEEEIQRMWILRKLLHTMEDVAATELLIDRLKNTKNNIEFFESMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaactgaacttaaaaaaaaaaatgtacatgaattattagaattagctatatct
atgaatatagaaaatctaatacgttatagaaaacaagatattatatttgctattcttaaa
aaacatgcgaaaggaggagaagatatttatggggagggagttttagaaatattacaagaa
ggttttggttttttaagaagttctgatagttcttatcaatcaggtcctgacgatatatat
gtttctccttcacaaattagacggtttaatttacgcaaaggtgatagtatatctgggaaa
atacgtcctcctaaagatgccgaaagatattttgctttattaaaagtaaataaaattaat
tttgatagaatagaaacagttaaaaaaaaaattttatttgaaaatttaactccattattt
ccaaattatagattacttatggaaattggtaatggttctactgaagatttaacttctaga
atcttagatttagttgctccaataggtaaaggacaacgtggattaattgtttctcctcca
aaagcgggcaagacaatgatgatgcaaaatatagctaatgctatagtaagaaatagccca
gaatgttatttaattgttttattaattgatgaacgtcctgaagaagtaacagaaatgtct
agaactgtaagaggagaagttatagcatctacttttgatgaaccacctactagacatgtt
caattagctgaaatggttatagaaaaagctaaaagattagttgaacataaaaaagatgta
gttataatgttagattcacttactagattagcaagagcttataatacagtagtcccatct
tctggtaaagtcttaactggtggagtagattcaaatgctcttgaaaaacctaaacgattt
tttggtgttgcacgtaatatagaagaaggtggtagtttaactattttagcatctgcttta
atagatactggatcaaaaatggatgatataatttttgaagaatttaaaggtacaggtaat
atggaagcacatttagatcggaaattagcagaaaaaagagtttttcctgcaataaatatt
agaaggtctggtacgcgtagagaagatttattatgtagtgaagaagaaatacaaagaatg
tggattttacgcaaattattgcatacaatggaagatgtagcagcaactgaattattaata
gatagattaaaaaatactaaaaataatatagaattttttgaatcaatgaaaagaagataa
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