Candidatus Portiera aleyrodidarum AF-CAI: PLF_082
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Entry
PLF_082 CDS
T03738
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pli
Candidatus Portiera aleyrodidarum AF-CAI
Pathway
pli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PLF_082 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pli03019
]
PLF_082 (deaD)
03009 Ribosome biogenesis [BR:
pli03009
]
PLF_082 (deaD)
Enzymes [BR:
pli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PLF_082 (deaD)
Messenger RNA biogenesis [BR:
pli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PLF_082 (deaD)
Ribosome biogenesis [BR:
pli03009
]
Prokaryotic type
rRNA helicases
PLF_082 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CEL12341
LinkDB
All DBs
Position
I:complement(85893..87311)
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AA seq
472 aa
AA seq
DB search
MNSSYYYKIKFKKFALLPAVLKSIKYENPFTVQIKTIPWLLEGRDLLGKAQTGTGKTAAF
ALPLLTRIDVTIKHTQVLVLAPTREIAQQVSGNFLIYGKYVKNISVITICGGQEYREQLR
GLNKAAHIVVGTPGRVIDHLIRGSMNLKHLNALVLDEADEMLRMGFIEDIEIILKKMPVT
TQKVFFSATLPFEIEPIVNRYLVNPIKIQIEYKTVKNTIIQKLCKIENNAKIEALARIIE
IYKINAAIVFVRTRASCSQLVEKLTSRSISAAALSGDLNQKLRDRTVYRLKLGKVNILVA
TDIAARGLDFPSITHVINYDIPNDKEAYIHRIGRTGRAGRVGTAITFVNRTELRKRKWLE
KALGQKMEIMEIPDVKALRDHRDRVFKNRVTTILASRNYNQRYLDQRYLVQELVDKGLNP
IELAAVFAHLAREKEAKIHEMPKKGVGGGLRKSRLGRRKGDRKKTSKFITVR
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgagttattattataaaattaaatttaaaaagtttgctttattaccagcggtt
ttgaagtctattaaatatgaaaatcctttcactgtacaaataaaaacaattccttggtta
cttgaaggacgtgatttattaggtaaagctcaaacaggaacagggaaaacagcagctttt
gcattacctttattaactagaatagatgtaactattaagcatacgcaagtattagtatta
gctcctactcgtgaaattgcacaacaagtttctggaaattttcttatatatggcaaatat
gtaaaaaatatttccgtaataactatatgtggtggtcaagaatatagagagcaattacgt
ggtttaaataaagctgctcatattgtagtaggtactcctggacgtgtgatagatcattta
ataagaggttctatgaatttaaaacatctaaatgccctggtactggatgaagctgatgaa
atgttacgtatgggttttatagaagatatagaaataatacttaaaaagatgcctgtcaca
acccaaaaagtgtttttttctgcaacattacctttcgaaatagaaccaatagttaatcgt
tatttagttaatcctataaaaattcagattgaatataaaacagtaaaaaatactattatt
caaaagttatgtaaaattgaaaataatgctaaaattgaagcattagcgcggattatagaa
atttataaaattaatgcagcaattgtctttgtgcgtactagagcttcttgtagccagtta
gtggagaaattaacttcacgtagtatttcagcagcagccctttctggtgatttaaatcaa
aaattacgggaccgaactgtatatagattaaagttaggtaaagttaatatattagttgct
acagatatagctgctagaggacttgactttcctagtattactcatgtaattaattatgat
ataccaaatgataaagaagcatacattcatcggataggtaggacaggcagggctggaagg
gtaggcacagctattacttttgtaaatagaactgaattacgaaaaagaaaatggttagaa
aaagctcttggacaaaagatggaaataatggaaatcccagatgtaaaggcattaagagat
catcgtgatcgggtttttaaaaatcgtgtaactacaatcttagcttctagaaattataat
caacggtatttagatcaacggtatttagtacaagaattagtagataaaggtttaaatcca
atagaattagcagcagtatttgcacatttagcacgtgaaaaagaggctaaaattcatgaa
atgcctaaaaaaggggtaggtggggggttaagaaaaagtagattaggacgtaggaaaggg
gatcggaaaaagacatcaaaatttattacagttagatag
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