Candidatus Pristimantibacillus lignocellulolyticus: NAG76_02180
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Entry
NAG76_02180 CDS
T09890
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plig
Candidatus Pristimantibacillus lignocellulolyticus
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plig03009
]
NAG76_02180 (rlmD)
Enzymes [BR:
plig01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NAG76_02180 (rlmD)
Ribosome biogenesis [BR:
plig03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NAG76_02180 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
MTS
Methyltransf_15
PrmA
Methyltransf_11
Methyltransf_12
PCMT
Methyltransf_32
UPF0020
TRM
Methyltransf_23
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
URN96744
UniProt:
A0A9J6ZLK6
LinkDB
All DBs
Position
complement(526898..528325)
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AA seq
475 aa
AA seq
DB search
MSTLHEKNETVQADIIGITHDGEGVGRTSAGYTLFIPNTLPGEQVEAKILKSKKQYGYAK
VTAFKNVSEQRVEPPCPIYKECGGCQLQHFDYEGQLVWKRQHVIDSLTRIGKLQVTGEQQ
VGAEGDATSTEHQVIVHPTVGMDNPWRYRNKAAVPIGRGESSEELVGGFYAKGSHRIVDM
KDCMIQKERNDEVIHQVKEIARELRVLPYDEETGTGILRHVVTRIGVVTGEVMVVLITNT
SRIARQPEWIEHIRKRIPNVKSIVHNVNDKVTNAIFGETTKVIWGSEVIYDELDGIRFAI
SARSFYQVNPEQTISLYRKAVEYAGLTGKEQVIDAYCGIGTISLFLARNAGHVYGVEIVP
EAIEDAKRNAKLNGLENTTFEAGPAEIVIPRWKKKGMKADVIVVDPPRKGCDAELLDTIL
AIRPERVVYVSCNPSTLARDLRLLEDGGYRTMEVTPVDMFPHTGHVEVVTWLERV
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaacgttacatgagaagaatgaaacggtgcaagcagatatcattggaataactcat
gatggagaaggtgttggacgtacaagtgcgggatatacattgttcattcctaacacattg
ccaggtgagcaagttgaagcgaagatattgaagtccaaaaagcagtacggctatgctaaa
gtgacagctttcaaaaatgtaagtgagcaacgtgtagaaccaccttgtccaatctataaa
gaatgcggtggttgtcagctacagcattttgattatgaaggtcagttagtgtggaaacgt
cagcatgttatcgatagtttaactcgtattggtaagctacaagtaacgggagaacaacaa
gttggcgcggaaggcgatgcaacgtctacagaacatcaagtgattgtacatccaacggta
ggtatggataatccttggcgttatcgtaataaggctgctgtgccaattggtagaggcgag
agtagtgaagagctagtcggtggtttctatgctaagggtagtcatcgtattgtcgatatg
aaagattgtatgattcagaaggaacgtaatgatgaagtcatacatcaagtgaaggaaatt
gctcgagaattgcgagtgttgccatatgatgaagagacgggaacaggtatattgcgtcat
gttgtaacacgtatcggcgtagttactggtgaggtaatggttgtacttattacgaatact
tctcgtattgcacgtcaacctgaatggattgaacatattcgtaaacgtattccgaatgtg
aagagtatcgtccacaatgtgaatgataaagttacgaatgcgatcttcggtgaaacgacg
aaagtgatctggggtagcgaagtcatttatgatgagttagatggtattcgctttgcaatc
tcagctagatcattctatcaagtgaatcctgaacagacgatttctctatatcgtaaagca
gttgaatatgcgggattaacaggtaaagagcaagtgatcgatgcatattgtggaattggt
accatctcgttgttcctagctcgtaatgctggtcatgtgtacggtgtagaaatcgtgcct
gaagcgattgaagatgctaagcgtaatgcgaagttgaatggactagaaaatactacgttt
gaagcgggacctgcagagatcgtcattccaagatggaagaaaaaagggatgaaagcagat
gttatcgtagtcgatccacctcgtaaaggctgtgatgcagagctactagatacgattctt
gcaattcgtcctgagcgtgtagtgtatgtaagttgtaatccatcaacgttggcgagggat
ttgagattgctcgaagatggtggctatagaacgatggaagtaacaccagtagacatgttc
ccgcatacggggcatgttgaagtagttacgtggttggagagagtgtag
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