Pristimantibacillus lignocellulolyticus: NAG76_04345
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Entry
NAG76_04345 CDS
T09890
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
plig
Pristimantibacillus lignocellulolyticus
Pathway
plig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAG76_04345 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plig03019
]
NAG76_04345 (rnr)
03016 Transfer RNA biogenesis [BR:
plig03016
]
NAG76_04345 (rnr)
Enzymes [BR:
plig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NAG76_04345 (rnr)
Messenger RNA biogenesis [BR:
plig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NAG76_04345 (rnr)
Transfer RNA biogenesis [BR:
plig03016
]
Prokaryotic type
tRNA degradation factors
NAG76_04345 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
CSD
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
URN95494
UniProt:
A0A9J6ZH60
LinkDB
All DBs
Position
complement(1078011..1080770)
Genome browser
AA seq
919 aa
AA seq
DB search
MVNEGQLLEFMKEIAYKPMTYQELEQHFQISEASDFKAFLKMLVALEDEGKILRTRSERY
GVPERMNLLRGRIQAHAKGFGFLIPDDKEHGDVYIHANDLKSAMNGDIVLIRITSKSENG
GRMEGEVERIVIRAVTQVVGVIEHHEAFAFVMPDDQRINRDIFIPKGKAKGAVSGQKVVV
QINVYPEGRSAAEGEVIEILGHKNDPGVDILSIIRKHQLPEQFPEEVMAEAEAAPDVITE
EEITSQNRRDLRNEVIVTIDGADAKDLDDAVHVKRLENGNLLLGVHIADVGYYVKERSAL
DQEAFLRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEIEFDAETLKQVRHDIF
TSVIRTTERMTYTDVRDILTATEEEPQTELKERYAPLLDMFELMEHLAMRLRKSRMKRGA
IDFDFQESKIIVDENGKAVDIVKRERSVAEQIIEEFMLVANETVAEHFYWMKVPFLYRIH
EDPDQEKLQTFMTFAANFGHVVKGKGNSVHPRALQTLLDKIQGTKEATVISTMMLRSMKQ
AKYDAESLGHFGLAAEYYSHFTSPIRRYPDLAIHRIIREVIEGGGTLSAKRQEALAIRMP
DVAQHSSQRERIAVEAERDTDRLKKCEYMLDKVGETFTGIIGSVTSFGMFVELENSVEGL
IRLGDMTDDYYNFHQDHMILVGERTSKIYRIGDEVEITVNRVNMSDHTIDFVFAGTKGNS
DRYFGRAGRKRQDAAPAGDRSGDRKPARGRKPASATGGNSTDRRKPREGGDNRPRQGDKR
SVGSDARGIKGKKKDFKRGPRTSAVTEGQATNPWTEDTRLVLDFDAVDKEKGTTPSDREE
SGTYFSNPFAGKPPKKKKSGSSQGGNKKLRKKTSSSGVFNGGKDSSKSSSIVLDPAQKKA
KKKKDKAKKAMGGFVRKKK
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacgagggtcaattgctcgaatttatgaaagaaatcgcctataagccgatgaca
tatcaagaattagaacagcattttcaaattagtgaagcttcagatttcaaagcgtttctg
aaaatgcttgttgcattagaagatgaaggtaaaatacttagaacgcgttctgaacgttat
ggtgtacctgaacgaatgaatttactacgtggacggatacaagcacatgctaaaggtttt
ggctttttaattccagatgataaggaacatggcgatgtatatattcatgccaacgatttg
aaaagtgcaatgaatggcgatattgtccttatccgtattacaagtaaaagtgaaaatggt
ggaagaatggaaggagaagtcgaacgtattgtgatacgtgcggttactcaagtcgtaggt
gttattgagcaccacgaagctttcgcattcgttatgccagatgatcaacgtattaatcga
gacatctttattcctaaaggcaaagctaaaggtgcagtttctggacaaaaagttgtcgtt
caaatcaatgtttatcctgaagggagatctgctgctgaaggtgaagttattgaaattctt
ggtcataaaaatgatccaggtgtagatatactgtcgatcattcgcaaacatcaacttccg
gaacaattccctgaggaagttatggcagaagctgaagctgctcctgatgtcattactgaa
gaagaaattacgagtcaaaatcgtcgtgatctgcgtaatgaagtaatcgtaactatcgat
ggcgcagatgctaaagatcttgatgatgctgttcatgtgaagcgtttagaaaacggtaac
ttattgcttggcgtacatattgctgatgtaggttactatgtaaaagaacgttctgcactt
gatcaagaggcgttccttcgtggatgcagtgtatatttagtcgatcgagtaattccgatg
ttaccacatcgattgtctaacggtatatgttcattgaatccacaagttgatcgcttgacg
ctttcttgtgaaattgaattcgatgcagagacattaaagcaagttcgacatgacatattt
acaagtgttattcgtacaacagagcgtatgacatatacagatgtacgtgatattcttaca
gctacagaggaagagcctcagacggaattgaaagagcgctacgcgccattattagatatg
tttgagcttatggaacatctggcaatgagattacgtaagagtcgcatgaaacgtggtgca
attgattttgatttccaagagtcgaaaattattgttgatgaaaacggcaaggctgtagac
atcgtgaaacgtgagcgttccgttgctgagcaaattattgaggagtttatgttagttgcg
aatgaaacggtagctgagcatttttactggatgaaagtacctttcttatatcgtatccat
gaggatccagatcaagaaaaactacaaacatttatgacatttgctgcgaactttggtcat
gtagtgaaaggaaaaggtaattctgttcatccacgtgcgttgcagacgctacttgataaa
attcaaggtacgaaggaagcaacagtaatctctacgatgatgcttcgttctatgaagcaa
gcgaaatacgatgcggaaagtttaggtcacttcgggcttgcagcagagtattattctcat
ttcacatcaccaattcgtcgttatcccgatcttgccatacaccgcatcattcgtgaggtc
attgaaggcgggggtacgctaagcgctaaacgtcaggaagctttagcgattcgtatgccg
gatgttgcgcaacattcttcgcaaagagagcgtattgctgtagaagctgaacgtgacacg
gatcgattgaaaaaatgtgaatatatgcttgataaagtaggagagactttcactggtatt
attgggagcgtaacaagcttcggtatgttcgtagaacttgaaaattctgtcgagggatta
attcgacttggcgatatgacagacgactattacaatttccatcaagatcatatgattctt
gttggtgaacgtacttccaaaatatatagaatcggtgatgaagtagaaattaccgtaaat
cgcgtgaatatgagcgaccatacgattgacttcgtgtttgcagggacgaaaggtaatagt
gaccgctactttggtagagcaggtcgtaaacgccaagatgcagcgccagcaggtgatcgg
tcaggtgatcgcaaaccagctcgcggtcgcaaaccagcctcagctactggagggaatagt
acagatcgacgtaagccaagagaagggggagacaatcgtcctcgtcaaggtgataagcgc
tctgtaggaagtgatgcacgaggtattaaagggaagaaaaaggacttcaaacgtgggcca
cgtacaagcgccgtaactgaaggtcaggcaactaatccatggactgaagacactcgctta
gttctagattttgatgcagtggacaaagaaaagggaaccactccatcagatcgtgaagaa
agtggaacatatttctctaatccattcgctggcaagccaccaaaaaagaaaaaatctggt
tcatctcaaggtggcaataagaagttacgtaagaagacatcatcaagcggtgtgttcaat
ggcggtaaagatagttctaagtcatcaagtattgtattagaccccgcacagaaaaaggca
aagaagaaaaaagataaagctaagaaagctatgggtggttttgttcggaaaaagaaataa
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