Candidatus Pristimantibacillus lignocellulolyticus: NAG76_07040
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Entry
NAG76_07040 CDS
T09890
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plig
Candidatus Pristimantibacillus lignocellulolyticus
Pathway
plig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NAG76_07040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plig03400
]
NAG76_07040 (mfd)
Enzymes [BR:
plig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NAG76_07040 (mfd)
DNA repair and recombination proteins [BR:
plig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NAG76_07040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
DUF3638
AAA_22
Motif
Other DBs
NCBI-ProteinID:
URN95981
UniProt:
A0A9J6ZIG9
LinkDB
All DBs
Position
1685738..1689268
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AA seq
1176 aa
AA seq
DB search
MKALIDLFAEDSELKSVVQGFDKGMKEQMVSGLSGSSRQVFLAALEDQLDRPLLVVTHNM
FSAQKIAEDLQDCLSSEKVLLYPANELMAAEAAISSPETLAQRMDVLLSLAKGFRGIVVV
PFSGIRRYLPTKESFIHAELEITVSQQIDPEHFLHKLNELGYTRADRVESKGELSVRGGI
IDFYPLTSKLAVRVEWFGDEIDSIRTFDPVDQRTVERMDSFVVPPAQEILATKERMQTAA
RHAANLLEAQLDKMSDRATKDKLRDEIGAEIGKLREGIYFSEIYKYISLLYPEQQSIIDF
VPADTLLVLDEPSRLIETAKQLERDETEWNLHLLQNGKSLPGFVLARESTQILQHRPFPT
LFIQLFLRQIPHTQPQNIVNITTRTMQSFHGQMNVLKAEMERWRKNGATIIMLAGNKERV
DRMQRVLLDYDIVPPQLLQGNLQQGFELPSSNLIVITEGEMFTQKQRKARRVDKKMDNAE
RIKSYTELKVGDYVVHQNHGVGKYVGIGTLEIGGIHRDYLHIVYAAGDKLSVPVDQVDLI
QKYVGNEDKEPKVNKLGGSEWTKAKSKARSSVQDIADDLIKLYAERQATPGFAFGEDTTY
QNEFEAMFPYEETKDQLRAIQEIKRDMEKAQPMDRLLCGDVGYGKTEVAVRAAFKAAMEG
KQVAVLVPTTILAQQHYETFRERFSGYPINVQVMSRFRSRKEQNETIKGLKNGTVDVVIG
THRLLSQDIIFSALGMVIVDEEQRFGVTHKEKLKKLKTSVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVLEHSHALVRESIERELARGGQVYYLYNRVQGIHQIAEEI
SELVPGARVSVGHGRMSEQELESTILDFLDGESDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRD
LSIRGAGNLLGAEQHGFIASVGFEMFSQMLAEEIKLRKQQMDGVEVEEKKVIQTVIDLSV
DAYLPNEFIYDSMQKIEIYKKAAVISTIEESDLLIEEIIDRFGDLPQSVINLMTVARMKV
LGSTLGITQITSKNDDFRLLFNTVPKKKAIRKDIDKLCLKMENRFKQSREDEGSYSIELR
GKGLTMEQKLHLTERFLFEYQSLTHQDEEKLHQATT
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcgctaatagatttatttgctgaagattctgagttaaaatcagtcgtacaaggt
tttgacaaagggatgaaagaacagatggtgtcaggactttctggctcctcgagacaagtt
tttctcgcagcattagaagatcagttagatcgtccattactagttgttacgcataatatg
ttctctgctcagaagatagcagaagatctacaagattgtttgtctagcgagaaggtgcta
ttataccctgccaatgaattaatggctgctgaagcagcaatatcaagccccgaaacatta
gcgcaaagaatggacgtactattgtccttagctaaaggttttcgaggtattgttgtcgtt
ccgttttctggcattagaagatatcttcctactaaagaatcttttatacatgctgaatta
gaaattaccgtaagtcagcaaattgatcctgaacatttcctccataagttaaatgagctt
ggttatacgagagcagatcgcgtggaatctaaaggtgaattaagtgtaagaggcggcatt
atcgacttctatccactcacctcaaagcttgcagtacgtgtagaatggttcggagatgaa
atagactcgattcgtaccttcgatcccgtagatcaacgtaccgttgaacgtatggactct
ttcgttgtgcctccagcacaagaaatactagcaactaaagaacgaatgcagacggcagct
aggcatgcagcgaacttactagaggctcagttagataaaatgagtgatcgtgctacaaag
gacaagttgcgtgatgagattggagcagaaattggcaaattacgagaaggtatctacttc
tctgagatttataagtacatttcattactatatcctgagcaacaaagcatcattgacttt
gtaccagccgatacattacttgtacttgatgaaccaagccggctaatcgaaacagcgaag
cagcttgaacgcgatgagacagagtggaacttgcatttattacaaaatggtaagtcatta
cctggtttcgttcttgctagagaaagcactcaaattctccagcatcgtccgtttcctaca
ttgtttatacaattgttcttaagacaaattccacatactcaaccgcaaaacatcgtgaat
ataacgactcgtacgatgcaaagtttccacggtcagatgaatgtactaaaggcagagatg
gagcgctggagaaaaaatggtgcaacgatcattatgcttgcaggcaacaaagagcgagtg
gatcggatgcaacgtgtattgctcgactatgatattgtgccgccacaattgctgcaaggt
aacttacagcaagggtttgagttgccatcgtctaacttaattgtcattactgaaggcgag
atgttcacacagaagcaacgtaaagctagacgtgtagataagaagatggacaatgctgaa
cgtataaaaagctacacggaacttaaggttggcgattatgtcgtacatcaaaatcatggt
gttggtaaatacgtagggattggtacgcttgaaatcggtggtatacaccgtgactatttg
catattgtatacgcggctggtgacaagttatctgtgcctgtagaccaagtcgatctcatt
cagaaatatgtaggtaatgaagataaagaaccgaaggttaataagctcggtggatcagag
tggacgaaggcgaaaagcaaagcgagatcatccgttcaagatatcgcggatgaccttatt
aaattatatgcggaaagacaagcaacccctggttttgcatttggtgaagatacaacgtat
caaaatgaatttgaagcaatgttcccatatgaagaaacgaaagatcaactacgagcgatt
caagaaattaagcgagatatggaaaaagcgcaaccgatggaccgcttactatgtggtgac
gtaggttatggtaagactgaggtagcggtacgtgcagcgtttaaagctgcaatggaaggt
aagcaggtagcggtactcgtaccaacgacaatattggcacaacagcattatgaaacattc
cgtgaacgatttagcggctatccgattaatgttcaagttatgagtcgtttccgttcgcgc
aaggagcagaatgagacaataaaaggtttgaagaacggtactgttgatgtggtcattgga
acacaccgtcttctatctcaagatattattttctcagcacttggtatggtcattgtcgat
gaggaacaacgctttggagttactcataaagagaaattgaaaaaattaaaaacaagtgta
gatgtgcttacattaacggccacacctattccacgtacgctacatatgtctatgcttggt
gtgcgtgacttgtcagtaattgaaacgccacctgaaaatcgtttccctgtccagacttat
gtattggaacattcgcatgcgcttgtacgtgaatcgattgagcgtgaattagcgcgtggt
ggacaagtgtattatttatataatcgcgtacaaggtatccatcaaatcgctgaagaaata
agcgaacttgtacctggtgctcgtgttagtgtggggcatggccgaatgagtgagcaggaa
cttgaatcgacgattctagatttccttgacggtgaatcagatgtactggttagtacaagt
attattgagacgggcgtagatattccgaacgttaatacattaatcgtacatgatgcagat
aaaatgggattatcccagttatatcaattacgcggacgtgttggccgttccaatcgaatt
gcctatgcctatttcacgtatcaacgagacaaagtgttgactgaagtagctgagaaacgt
ctacaatcgattaaggaatttactgaactaggttcgggattcaaaattgcgatgcgtgac
ttatcgattcgcggagcgggtaacttacttggagctgagcaacatggttttattgcatcc
gttggttttgagatgttctcacaaatgcttgcagaagagattaagcttagaaagcaacag
atggatggcgtagaagtagaagagaaaaaagttattcaaaccgttatcgatttaagtgtc
gatgcctatttaccgaacgaatttatttacgatagtatgcaaaaaatcgaaatttacaaa
aaagccgcggttatttctacgattgaggaatcagatttattaatcgaagaaatcattgat
cgtttcggtgacttaccgcaatcggttattaatctaatgactgttgctcgcatgaaagtg
cttggttcaactcttggaattactcaaattacgagtaaaaatgatgatttccgtttatta
tttaatacagtgcctaagaagaaggcgatacgtaaagatattgataagttatgtttgaaa
atggaaaatagatttaaacagtctagagaagatgaaggttcatatagtatcgaattacgt
ggcaaaggtttaacaatggaacaaaagttacatctaaccgagcgattcctatttgaatat
cagtcattaactcatcaagatgaagagaagctgcatcaggcgacaacataa
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