Candidatus Pristimantibacillus lignocellulolyticus: NAG76_10775
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Entry
NAG76_10775 CDS
T09890
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plig
Candidatus Pristimantibacillus lignocellulolyticus
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plig03009
]
NAG76_10775 (rlmD)
Enzymes [BR:
plig01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NAG76_10775 (rlmD)
Ribosome biogenesis [BR:
plig03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NAG76_10775 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
Cons_hypoth95
PrmA
Methyltransf_11
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
URN96668
UniProt:
A0A9J6ZKT1
LinkDB
All DBs
Position
2563595..2564989
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AA seq
464 aa
AA seq
DB search
MTNIKEQTLVAEIDHLDEKGNGLAVIWRESKGSNPRKLKLTIPQTLIGESIQVVVDDPDK
KRRKVMAEEILVASPERTDAPCPHFELCGGCVWQHWTYEGQLKHKTNHVKSALEREGIDS
ELVLNTIGMDDQWHYRNKMEFTFSPEGDLGMHEQGNFRKIIPLETCLIAGRNMVDGMLEV
GEWVKEFNLNGYDKDAHEGLLRHLMVRESFATGEMMLALFATQTPDSELASAIENLVERI
TKKFPNVKSLLWLVNTDWADRTQSEDTHLLAGRDFIYDEMAGYRYRLWFDTFFQTNPVQA
QKLVDLALEMGKPQADEKMIDLFCGVGTFSLPFAARVKELAGIELVETSIESAKRNAIDN
DLHNTTFLARDARRGLDEMHEHFGFADILLIDPPRSGAGGKVMRRIGRSKPKRIVYVSCN
PDTFATDVAELLPFGYTLQTVQPVDLFPHTVHVECVALMSRIDK
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttgactaatataaaagaacaaacgctcgtcgcggaaatcgatcatttagatgaaaaaggc
aatggactagctgtcatttggcgtgagagtaaaggttccaatcctagaaagttgaagtta
acaattccacagacactcatcggagagtccattcaggtcgtcgtcgatgatcccgataaa
aaacgaagaaaagtaatggctgaagagattttagtcgcaagccctgaacggacggatgca
ccttgtcctcattttgagctttgcggaggttgtgtatggcaacactggacgtatgaaggt
caattgaagcataagacgaaccatgtgaagagcgcgttggaacgtgaaggaatagattct
gaactggtactgaatacgattggtatggacgatcagtggcattaccggaataagatggag
ttcacattctcccctgaaggggatcttggaatgcatgagcaagggaatttccgtaaaatt
ataccactggaaacatgtctcattgcagggcggaatatggtcgatggcatgttggaagtt
ggagaatgggtaaaagaattcaaccttaatggctatgacaaagatgcacatgagggcctt
cttcgtcatttaatggtacgagaatcgtttgcgactggcgagatgatgctggcattattt
gctacgcaaacgcctgacagtgaattagcgtcagcaattgaaaatcttgtcgagcggatt
acgaaaaagttcccgaacgtgaaaagcctactttggcttgtgaacacagattgggcggat
cgcacacaatccgaggatacacatttgttagcggggcgtgatttcatctatgatgaaatg
gcaggttatcgctatcgtctgtggttcgatacattcttccagacgaaccctgtacaggct
caaaagcttgtggatcttgcgcttgagatgggaaaaccacaagcagacgagaaaatgatc
gacctgttttgtggagtcggcacgttctcattaccgtttgctgcacgagtgaaggaattg
gcaggaattgaacttgtcgagacatcgattgaatccgcaaaacggaatgctatcgataat
gatttgcataacacgacattccttgcccgtgatgcacgcaggggactagatgagatgcat
gaacatttcggattcgcagatattctgttgatagacccaccacgtagcggagctggtggg
aaagtgatgcgtcgtattggacgctccaaaccaaaacgtatcgtctatgtatcatgtaac
cctgacacattcgcaactgacgtagctgagttgctaccatttggctacacgcttcaaacc
gtgcaacctgtggatttattccctcatactgtgcatgttgagtgtgtggctttgatgtca
cggattgataaatag
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