Pristimantibacillus lignocellulolyticus: NAG76_16740
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Entry
NAG76_16740 CDS
T09890
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
plig
Pristimantibacillus lignocellulolyticus
Pathway
plig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAG76_16740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plig03019
]
NAG76_16740
Messenger RNA biogenesis [BR:
plig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NAG76_16740
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF2201
Motif
Other DBs
NCBI-ProteinID:
URN93466
UniProt:
A0A9J6ZBI7
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All DBs
Position
3921432..3923111
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AA seq
559 aa
AA seq
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MSKKNNQDKLLVFALGGVGEIGKNMYVVQYNDDIVVVDAGLKFPEEDMLGIDIVIPDVGY
LVEHQDKVRGIIITHGHEDHIGGLSYVLKSLNVPVYATKLTLGLIEVKLKEAGILGDTKR
ILISADSEIQLGTITASFFKTNHSIPDSVGVCLDTPEGTIVHTGDFKFDHTPVNDQFADL
QRIAAIGSKGVLALLSDSTNAERPGYTPSESNVGNELEDIFRKSTQRVVVATFASNVHRI
QQVINASIATRRKIAVVGRSMVNVVTIASELGYLNIPEGMIIEPEEVNRMAADRVVILCT
GSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPIPGNERYVGRTVDELFRLGAHVIYG
PGSVSGVHVSGHGSQEELKLMLNLVKPKYFIPVHGEYRMLRLHADLGEEVGIPPENIFVL
DNGETVEFQGGQAARGPKVQAGRVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKA
DGTILSGPDIISRGFVYVRESEGLLDEANRIVTSTLTKLMNDKVNEWASLKTNVKDSLGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaaaaagaataaccaagataagttacttgtctttgcactaggcggagtcggcgaa
atcggtaaaaatatgtacgtcgttcaatataacgatgacattgtagtagtagatgcagga
ttgaaattccctgaggaggacatgctcggtattgatatcgtaattccagatgttggatac
ttagtagaacatcaggataaagtacgcggtatcattattactcacggacatgaagaccac
atcggtggtttgtcatatgtattgaaaagcttaaatgttcctgtgtatgcaacaaaatta
acactaggattaatcgaagtgaaattaaaagaagctggaatactaggagatacaaaacgt
attcttattagtgcagatagtgaaatccaacttggaacgatcactgcaagcttcttcaaa
acgaatcacagtattcctgattcagtcggagtatgtttagatacaccagaaggtacgatt
gtacatacaggtgatttcaaatttgatcacacacctgttaatgatcaatttgcagatttg
cagcgtattgcagcgatcggtagcaaaggcgtattagctctactatctgattctacaaat
gctgaacgtccaggatatacaccttctgaaagcaatgtaggtaatgaactagaagatata
ttccgtaaatcaacgcaacgtgttgttgtagctacgtttgcttcaaatgtacatcgcatt
cagcaagtaattaatgcttcgattgcaacacgccgcaaaattgcagtcgtaggtcgtagt
atggtaaatgtcgttacgattgctagtgagctaggctacttgaatattcctgaaggaatg
attattgagcctgaagaagtaaatcgtatggcagctgatcgtgttgtaatcttgtgtact
ggtagtcaaggcgaaccaatgtctgcgcttactcgtatggcacgttcaacacatcgcaaa
gtagatattttacctggagatacggtgatcattgccgcgacgcctatccctggtaatgaa
cgttatgtaggtagaacggtagatgaattgttccgtcttggagcacatgttatctacgga
ccgggatctgtatcaggtgttcacgtatctggtcacggtagtcaagaagaattaaaacta
atgcttaatcttgttaagcctaaatactttattcctgttcacggtgaatatcgtatgctt
cgtcttcatgctgatcttggtgaagaagttggaatccctccagaaaacattttcgtatta
gataatggtgaaactgttgagttccaaggtggccaagctgcacgtggacctaaagttcaa
gcaggtcgtgtacttatcgacggattaggtgtaggtgacgtaggtaatatcgtattacgt
gaccgtaaactactatctcaagatggtattctagtcgttgttgtaacactaagcaaagca
gatggaacaattctatctggtccagatattatttcacgtggttttgtttacgttcgtgag
tccgaaggacttcttgacgaggcaaaccgtatcgtaacttctacacttactaaattaatg
aacgataaagttaatgagtgggcttcattaaaaacaaacgtaaaagattctctaggtaga
ttcctatatgagcaaacacgtcgtcgcccgatgattttaccaattattatggaagtataa
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