Pristimantibacillus lignocellulolyticus: NAG76_21200
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Entry
NAG76_21200 CDS
T09890
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plig
Pristimantibacillus lignocellulolyticus
Pathway
plig02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NAG76_21200 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plig03021
]
NAG76_21200 (rpoD)
Transcription machinery [BR:
plig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NAG76_21200 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
DUF2408
Motif
Other DBs
NCBI-ProteinID:
URN94306
UniProt:
A0A9J6ZDS0
LinkDB
All DBs
Position
complement(4864320..4865450)
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AA seq
376 aa
AA seq
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MANDQHTELDTEQKLDHAKDQLIEIGKKRSSLTYKEIMEKLSPFDQEPEQIDEFFEQLDD
LGIEVLNEKEEENPLAPAGEDQEREGDDFNFDDDLALPPGIKINDPVRMYLKEIGRVPLL
SSEDEIELAIRIENGDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLLKAV
EKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGR
EPTPEEIAAEMELSTEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAA
YELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR
KLRHPSRSKRLKDFLE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaattagatactgagcaaaagttggatcatgcgaaggat
caactgattgaaataggtaagaaaagatcttctttaacttataaagaaataatggagaag
ctttctccctttgatcaggaaccagagcaaatcgatgaatttttcgaacaattagatgac
cttggtattgaggtgttgaacgaaaaagaagaagaaaatccacttgcgcctgctggagaa
gatcaggagcgtgaaggggatgactttaattttgatgatgatctagcgttgccgccaggt
atcaaaattaatgaccctgtacgtatgtatcttaaggagattggtcgagttccgttgcta
tcttcagaagatgagattgagttggctattcgtattgagaatggtgacgaggaagcgaag
aaacgtttagcagaagctaacttacgacttgttgtaagtattgcaaaacgctacgttgga
cgtggaatgcttttccttgacttaattcaagaaggtaacatgggtcttcttaaggcagtt
gagaaatttgactacgagaagggctttaagtttagtacgtatgctacatggtggattcgt
caagccattacgcgtgcgatcgctgaccaagcacgtacgattcgtatccctgttcatatg
gtggaaacaatcaacaaattaattcgtgtttctcgtcaattattacaagaacttggacgc
gaaccaactccagaagaaattgctgctgagatggaattaagtactgaaaaagtgcgtgaa
ataatgaagatcgctcaagagccggtatcacttgaaacacctatcggtgaagaagacgat
tctcatcttggtgactttattgaggatcaagaggcacttgcacccgcagatgcagctgct
tacgaattattaaaagaacagcttgaagatgttctagatactttaacagagcgtgaagag
aatgtacttcgcttacgttttggtctagacgatggtcgtacacgtacactagaagaagta
ggtaaagtttttggtgttactcgtgaacgtattcgtcaaatcgaagcgaaagctctgaga
aagcttcgtcatccaagccgtagcaaacgactaaaagatttccttgaatag
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