Candidatus Pristimantibacillus lignocellulolyticus: NAG76_21495
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Entry
NAG76_21495 CDS
T09890
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plig
Candidatus Pristimantibacillus lignocellulolyticus
Pathway
plig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAG76_21495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plig03019
]
NAG76_21495
03009 Ribosome biogenesis [BR:
plig03009
]
NAG76_21495
Enzymes [BR:
plig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAG76_21495
Messenger RNA biogenesis [BR:
plig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NAG76_21495
Ribosome biogenesis [BR:
plig03009
]
Prokaryotic type
rRNA helicases
NAG76_21495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
mRNA_decap_C
Motif
Other DBs
NCBI-ProteinID:
URN94363
UniProt:
A0A9J6ZDY7
LinkDB
All DBs
Position
4933147..4934685
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AA seq
512 aa
AA seq
DB search
MTNAFNQLGVAEQLAEQLKLQGIIQPTPIQKTAIPDLLNGIDMIAQAQTGTGKTLAFTLP
ILQLIRPDKDHVQALILTPTRELALQITAEVKKLAKSVGATVLACYGGQDVAAQVKRLKN
APHIIVATPGRLMDHMRRGSINIGRISHLVLDEADQMLHMGFLPEVESIIMQTPKARQTM
LFSATMPEAIRKLAVQYSKNPINVHIKSERVTLDNIKQRAIETTDREKQSALLHLLQTAS
PFLAVIFCRTKLRAKKLTEALQDAGYNADELHGDLTQAKREQVMKKFRDMKLQILVATDV
AARGLDVEGVSHVYNYDIPLDAESYIHRIGRTGRAGHTGTAITFVTQHDRLKLEAIERGI
SARLPLRKVDGLEVSPRQYGEDRQGSRNRKSKPGSGYESKGRNGNDSSRFNKGGKGSSER
GGKGSSERSGKVFPRPVSESSKPKAKDKANPWGISKSDLDLAQGIKPRDAGKSYSSSRTS
SSSRGDNSSSNRSSGGRSGGRSGSRSSGTRRK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatgcatttaaccaattgggagtagcagagcagcttgcggagcagttgaagcta
caaggaattatccagccaactcctatccaaaagactgctatacctgatcttctcaatggt
atagatatgattgcccaagcacaaacaggaacaggaaagacattagcctttacacttcct
atcctacaactgatccgtcctgataaggatcacgttcaagcattaattcttacaccaaca
cgtgagttagctctacaaattaccgctgaagtaaaaaaacttgctaagagcgtaggtgct
actgtactcgcttgttatggtggacaagatgttgcagcacaagtgaaaagactaaaaaat
gcaccacatattattgtagcaactcctggtcgactgatggatcatatgcgaagaggaagt
atcaacatcggtagaatttctcatcttgtacttgatgaagctgatcaaatgcttcacatg
ggtttccttccggaagttgaatcaattattatgcagactccaaaagcaagacaaacgatg
ttgttctctgcaactatgccagaagctattcgtaaattagcagttcaatattcaaagaac
ccaattaacgttcacattaagtcagagcgtgtaacacttgataatattaagcagcgtgca
atcgaaacaacagatcgcgagaagcaatctgctcttctacatctgttacaaacggctagt
ccgtttcttgcagttattttctgccgtacgaaacttcgtgccaagaagctaacagaagca
ctgcaggatgcaggttataacgcggatgaattgcatggtgatttgacacaagcgaagcgt
gaacaagttatgaagaagttccgcgatatgaaattgcaaatactagtagctactgatgtt
gctgctcgtggactagatgttgaaggtgtatctcatgtatacaactacgatatcccacta
gatgctgaaagttatattcatcgtatcggtcgtactggtcgtgctggtcatactggtaca
gcgattactttcgtaacacaacatgacagattgaaacttgaagcaatcgagcgcggtatc
tcagctagattaccacttcgtaaagtagatggacttgaagtttctcctcgccaatatgga
gaagatcgtcaaggttctagaaatagaaaaagtaaacctggtagcggatatgaatcaaaa
ggccgtaatggaaacgattctagtcgcttcaacaaaggcgggaagggatcatctgagcgt
ggtggtaaaggatcttcggaacgtagtggtaaagtattccctcgtccagtttctgaatcg
tctaaaccgaaagcaaaagacaaagccaatccttggggcatttccaaatctgatctagat
ctagctcaaggaattaaaccaagagatgctggcaaatcatatagttcatctcgtactagc
agtagtagtcgcggtgacaattccagtagcaaccgatcaagcggtggacgctctggcggt
agaagcggttcaagaagtagcggcactcgccgtaaatag
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