Pristimantibacillus lignocellulolyticus: NAG76_21675
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Entry
NAG76_21675 CDS
T09890
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plig
Pristimantibacillus lignocellulolyticus
Pathway
plig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NAG76_21675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plig03019
]
NAG76_21675
03009 Ribosome biogenesis [BR:
plig03009
]
NAG76_21675
Enzymes [BR:
plig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NAG76_21675
Messenger RNA biogenesis [BR:
plig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NAG76_21675
Ribosome biogenesis [BR:
plig03009
]
Prokaryotic type
rRNA helicases
NAG76_21675
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
Motif
Other DBs
NCBI-ProteinID:
URN94398
UniProt:
A0A9J6ZE13
LinkDB
All DBs
Position
complement(4967145..4968743)
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AA seq
532 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEESTPIQDKAIPIGLTGKDLIGQAQTGTGKTAAFGIPL
INKIPVSEERIVALIMTPTRELAIQVSEEIGKLTKYKGLRSLPIYGGQEIGRQIRALKKK
PQIIIGTPGRLLDHINRKTIRLEDVQTVVLDEADEMLDMGFMEDIQNILKQVPADHQTML
FSATMPVNIQRLAQQFLREPEHVSVIPKQVTAPSIEQSYIEVHERQKFEALSRLLDMESP
ELAILFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGKAWSFVTPREIDHLHFIEKITR
QKMVKKPLPSLSEAIEGKQRITAERVIDLVDNGDFAEYKGLSIQLLEQYDSVQLVAAALK
LLTGDKKEVNIELTPEEPLRAKKRRPDVRSSGRPFNRGGSGSGGGGYRGGGNSGSRDRRP
GGGYKGNSSEGSKDGARSGYNKRSGSSEGRSYEQRRPSENRRPRPNTTTTNE
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgctgaatttggcttggaacctaaagtgttacaagcaattacagagctt
ggatttgaggagtcaacacctatacaggataaagcgattccgattggattaactggtaaa
gacttgattggccaagctcaaacaggaacgggtaagacagcggcattcgggattccgcta
attaacaaaattccggttagcgaagagcgcattgttgcgcttattatgacccctacacgt
gagcttgcaatacaagtttcagaagaaatcggaaagcttacgaaatacaaaggacttcgt
tcattgccaatttatggtggacaagaaattggccgtcaaattcgcgctttgaaaaagaag
cctcaaatcattattggtacacctggtcgtctacttgaccatattaaccgcaaaacaatt
cgtttggaagatgttcaaacggttgtactagatgaagcggatgaaatgttggacatgggc
ttcatggaggatattcaaaacatccttaagcaagttccagcggatcaccaaacaatgttg
ttctcagcaacaatgccagtcaacattcaacgtctagcacaacaatttttacgtgagcct
gaacatgtgtctgtaattcctaaacaagttactgcaccgtccattgaacagtcatacatt
gaagttcatgaacgccaaaagtttgaagctcttagccgtttgcttgatatggaatctcca
gaactagcaattctattcggtcgtacaaaacgccgtgtagatgagcttagtgaagcattg
caaaaacgtggatatagtgcagatggccttcatggtgatctatcacaaaatcaacgtgat
gctgtaatgcgtaaattccgtgatggaagcattgatgttctagttgctactgacgtagct
gctcgtggacttgacgtttctggtgtaacgcatgtagtcaactttgacctaccgcaagat
cctgaaagctatgtacaccgtatcggtcgtactggtcgtgcaggtaaagaaggtaaagct
tggtcattcgtaactccacgtgaaattgatcatttacactttatcgagaaaattactcgt
caaaaaatggttaaaaaacctttgccaagcttaagcgaagcaattgaaggtaagcaacgt
attactgctgagcgtgttatcgacttagttgataatggtgattttgcagaatacaaaggt
ctttctattcaattacttgagcaatacgattctgtgcaattagttgctgcagcattgaaa
ttgcttacaggcgataagaaagaagttaatatcgaattaacacctgaagaaccacttcgt
gcgaaaaaacgtagacctgatgttcgttctagcggtcgtccgttcaatcgtggtggtagt
ggatcaggtggcggtggttatcgtggtggcggtaacagcggttcaagagatcgtcgtcct
ggtggcggctacaaaggtaacagtagcgagggttcaaaagatggcgcacgcagcggctac
aacaaacgtagtggcagtagtgaaggtcgtagttatgaacaacgtcgcccttcagaaaac
cgtcgtcctcgtccaaatacaacaacaactaatgagtaa
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