Pseudomonas lijiangensis: KQP88_00020
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Entry
KQP88_00020 CDS
T08713
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
plij
Pseudomonas lijiangensis
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plij03032
]
KQP88_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
plij03400
]
KQP88_00020 (gyrB)
Enzymes [BR:
plij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
KQP88_00020 (gyrB)
DNA replication proteins [BR:
plij03032
]
Prokaryotic type
DNA Topoisomerases
KQP88_00020 (gyrB)
DNA repair and recombination proteins [BR:
plij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KQP88_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QWU83224
LinkDB
All DBs
Position
3803..6220
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AA seq
805 aa
AA seq
DB search
MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDD
ISITIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GVSVVNALSEVLQLTVRRSGKIWEQTYVHGVPQEPMKIVGESDSTGTQIHFKPSAETFKN
IHFSWDILAKRIRELSFLNSGVGIFLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQV
FHFNVQRDDGVGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ
EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSD
FLLENPNEAKAVVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE
LYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG
REEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKK
GKQEQYIKDDDAMEEYMTQSALEDASLHLNDSAPGISGESLERLVNDFRMVMKTLKRLSR
LYPQELTEHFVYLPPVTLEQLSDHAAMKDWLAKFDERLRAGEKSGLVYKASLREDRERNV
WLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISSLLEEGAYVQRGERKKPVTEF
KDALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIAADQIFNT
LMGDAVEPRRDFIESNALAVSNLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaatcaaacgtacgactcgtccagcattaaagtgctgaaaggacttgatgcc
gtacgcaagcgtcccggaatgtacatcggtgatacagacgatggcagcggtctgcaccat
atggtgttcgaggtggttgataactcgatcgacgaagctttggctggccactgcgacgac
atcagcatcaccatccatccagacgaatccattaccgtacgcgacaacggccgcggtatt
ccggtagacgtccacaaagaagaaggcgtttcggctgcagaggtcatcatgaccgtgctc
cacgccggcggtaagttcgatgacaactcctacaaggtttccggcggtctgcacggtgta
ggtgtttctgtagttaacgccctctcggaagtcctgcaactgactgtacgtcgcagcggc
aagatctgggagcaaacctacgttcacggtgttccacaggaacccatgaaaatcgtgggt
gagagcgatagcaccggtacacagatccacttcaaaccttccgctgaaaccttcaaaaac
atccatttcagctgggacatcctggccaagcggattcgtgaactgtcattcctgaactcc
ggcgttggtatcttcctgaaggacgaacgcagcggtaaggaagagctgttcaagtacgaa
ggtggtctgcgcgcttttgttgaatatctcaacaccaacaagactgcggtcaaccaggtc
ttccacttcaacgtccagcgtgacgatggcgtgggtgtcgagatcgccttgcagtggaac
gacagcttcaacgagaacctgttgtgcttcaccaacaacattccgcagcgtgacggcggt
acgcatcttgttggtttccgttctgcgttgacccgtaacctgaacaactacatcgaacag
gaaggtctggccaagaagcacaaagttgccacgaccggtgacgatgcgcgtgaaggcctg
actgcgatcatctcggtcaaggtgccggatccgaagttcagctcccagaccaaagacaag
ctggtttcgtccgaagtcaaaaccgcagttgaacaagagatgggtaaatacttctctgac
ttcctgctggaaaacccgaacgaagccaaggctgtcgtgggcaagatgctcgatgctgca
cgcgctcgtgaagctgcacgcaaggctcgtgaaatgactcgccgtaaaggcgcgctggat
attgcaggtctgccgggcaagctcgctgactgccaggaaaaagaccctgccctttccgaa
ctgtacctcgtggaaggggactctgctggcggttcagccaagcaggggcgtaatcgtaaa
acccaggcaatcctgccgctcaagggcaagatcctcaacgtcgagaaagcacgtttcgac
aagatgatctcttcccaggaagtgggcactttgatcactgccttgggctgtggcatcggc
cgcgaagagtacaacatcgacaaactgcgttatcacaacatcatcatcatgaccgatgct
gacgtcgacggttcgcacatccgtaccctgctgctgacgttcttcttccgtcagttgccg
gagctggtcgagcgtggctacatctatatcgctcagccaccgctgtacaaagtcaagaaa
ggcaagcaagagcagtacatcaaagacgacgacgccatggaagaatacatgacccagtcg
gctctggaagacgccagcctgcacctgaacgactcggctcctggtatctccggcgaatcg
ctggaacgcctggtcaacgacttccgcatggtcatgaagactctcaagcgtctgtcgcgt
ctctatcctcaggagctgaccgagcacttcgtttacctgcctcctgtcacgctcgagcaa
ctgtctgaccatgcagccatgaaagactggctggccaagtttgatgagcgtctgcgtgcg
ggtgagaagtcaggtctggtgtacaaggccagcctgcgtgaagaccgtgaacgtaacgta
tggctgccagaggtcgaactgatctcccatggcctgtcgaactacgtcaccttcaaccgc
gacttcttcggcagcaacgactacaagaccgtcactgccctgggtgcacaaatcagctcc
ctgctggaagaaggcgcctacgtgcaacgtggcgagcgcaagaagccagtcaccgagttc
aaggatgccctcgcctggctgatggccgaaagcaccaagcgccacaccatccagcgctat
aaaggtctgggcgaaatgaacccggatcagctctgggaaaccaccatggacccaagcgtg
cgccgcatgctgaaagtcacgatcgaagacgcaatcgccgccgaccagatcttcaacacc
ctcatgggtgatgcggtcgagccacgtcgcgacttcatcgagagcaacgcgctggcggtt
tccaacctggatttctaa
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